Factsheet for Os03t0119100-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
vacuole 1
plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 27800704
plasma membrane: 28056797

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 28056797 doi

N Yang, T Wang

Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os03t0596900-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G11850.1	Os03t0596900-01	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG40331	Sorghum	cytosol	81.44	82.32
Zm00001d027386_P002	Maize	cytosol	81.32	81.41
HORVU4Hr1G085550.2	Barley	cytosol	78.32	78.7
TraesCS5A01G520900.1	Wheat	cytosol	77.37	77.74
TraesCS4D01G346700.1	Wheat	cytosol	77.01	77.38
Zm00001d050470_P001	Maize	mitochondrion	36.17	75.88
TraesCS4B01G352300.1	Wheat	cytosol	77.01	75.03
PGSC0003DMT400000378	Potato	cytosol	23.23	74.05
CDY41006	Canola	mitochondrion	13.41	71.79
PGSC0003DMT400026602	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	26.23	71.57
Bra022740.1-P	Field mustard	cytosol, extracellular	10.54	69.84
CDY28756	Canola	cytosol, extracellular	10.54	69.84
GSMUA_Achr8P12030_001	Banana	plastid	66.11	68.66
KRG89825	Soybean	cytoskeleton, cytosol, peroxisome	23.83	68.38
CDY13283	Canola	mitochondrion	28.74	67.99
Bra000752.1-P	Field mustard	cytosol, nucleus, peroxisome	41.8	66.35
Solyc08g080130.2.1	Tomato	nucleus	66.11	65.25
PGSC0003DMT400058531	Potato	plastid	65.99	64.9
Zm00001d015818_P002	Maize	cytosol, nucleus, peroxisome	21.44	64.62
VIT_02s0025g04620.t01	Wine grape	cytosol	64.91	63.76
CDX86742	Canola	cytosol	63.71	62.81
Solyc01g091910.2.1	Tomato	plastid	67.31	62.79
Bra014871.1-P	Field mustard	cytosol	63.59	62.69
KRH77467	Soybean	nucleus	63.95	62.6
CDX90807	Canola	cytosol	59.88	61.96
AT4G11850.1	Thale cress	cytosol	63.35	61.66
CDY64184	Canola	mitochondrion	59.52	60.98
Os10t0524400-01	Rice	plasma membrane	76.05	60.71
AT4G11840.1	Thale cress	cytosol	62.4	60.16
AT4G11830.2	Thale cress	cytosol	61.44	59.93
AT4G00240.1	Thale cress	cytosol	66.23	59.65
Bra000753.1-P	Field mustard	cytosol	55.69	58.56
KRG93706	Soybean	nucleus	20.36	58.42
CDX90808	Canola	cytosol	55.45	58.31
CDX90066	Canola	cytosol	67.43	57.8
KRH77470	Soybean	cytosol	9.46	57.66
GSMUA_Achr5P20150_001	Banana	cytosol	68.74	57.57
CDY13284	Canola	cytosol	31.14	56.64
KRH65182	Soybean	cytosol	50.78	55.86
KRH77469	Soybean	nucleus	4.67	55.71
CDY52961	Canola	cytosol, nucleus, peroxisome	65.99	55.54
CDY54926	Canola	cytosol, nucleus, peroxisome	65.87	54.84
CDY15144	Canola	peroxisome	67.78	53.2
Bra033225.1-P	Field mustard	cytosol	67.78	52.9
Os07t0260400-01	Rice	cytosol, plasma membrane	53.05	52.86
KRH48290	Soybean	nucleus	65.03	51.86
CDY46254	Canola	cytosol	5.99	51.55
Os09t0543100-02	Rice	plasma membrane	52.57	51.41
VIT_15s0048g01160.t01	Wine grape	cytosol	66.35	50.97
AT2G42010.2	Thale cress	peroxisome	67.54	50.9
KRH01625	Soybean	cytosol	65.51	49.86
KRH70487	Soybean	cytosol	65.39	49.37
Solyc10g017650.1.1	Tomato	cytosol	66.11	49.33
Os06t0604400-01	Rice	plasma membrane	45.75	46.76
Os01t0172400-03	Rice	plastid	43.71	44.95
Os06t0604200-02	Rice	cytosol, plasma membrane	44.19	44.35
Os05t0171000-01	Rice	plasma membrane	43.71	44.3
Os06t0604300-01	Rice	plasma membrane	43.95	43.59
Os03t0391400-01	Rice	plasma membrane	22.75	43.38
Os09t0421300-01	Rice	cytosol	40.6	41.49
Os03t0840800-01	Rice	cytosol	16.41	38.59
Bra008515.1-P	Field mustard	mitochondrion, plastid	65.99	38.0
Os08t0401800-00	Rice	plasma membrane	35.93	37.27
Os02t0120200-01	Rice	extracellular	22.04	20.22
Os05t0358700-01	Rice	cytosol, plasma membrane	1.68	8.05

Protein Annotations

KEGG:00564+3.1.4.4	KEGG:00565+3.1.4.4	Gene3D:2.60.40.150	Gene3D:3.30.870.10	MapMan:5.7.2.4.2	ProteinID:BAF10691.1
ProteinID:BAS82005.1	InterPro:C2_dom	InterPro:C2_domain_sf	GO:GO:0003674	GO:GO:0003824	GO:GO:0004630
GO:GO:0005488	GO:GO:0005509	GO:GO:0005575	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0016020	GO:GO:0016042	GO:GO:0016787	GO:GO:0046470
GO:GO:0070290	InterPro:IPR000008	InterPro:IPR001736	InterPro:IPR035892	EnsemblPlantsGene:Os03g0119100	EnsemblPlants:Os03t0119100-01
PFAM:PF00168	PFAM:PF00614	PFAM:PF12357	PIRSF:PIRSF036470	InterPro:PLipase_D/transphosphatidylase	InterPro:PLipase_D_C
InterPro:PLipase_D_fam	InterPro:PLipase_D_pln	PFscan:PS50004	PFscan:PS50035	PANTHER:PTHR18896	PANTHER:PTHR18896:SF61
UniProt:Q0DVP7	SMART:SM00155	SMART:SM00239	SUPFAM:SSF49562	SUPFAM:SSF56024	UniParc:UPI0000E11EE1
SEG:seg	:	:	:	:	:

Description

PHOSPHOLIPASE D beta 2Similar to Phospholipase D beta 2. (Os03t0119100-01)

Coordinates

chr3:-:1027590..1031440

Molecular Weight (calculated)

93225.8 Da

IEP (calculated)

7.438

GRAVY (calculated)

-0.357

Length

835 amino acids

Sequence
(BLAST)

001: SNWSGMDVVW PHGHGVWGSS SASRRSAMLH GSLDIWIHEA RNLPNMDIVS KTVVDILGTK KKKKAANGAM TSDPYVTVQL ASATVARTYV VNDDENPVWA
101: QHFLIPVAHE APAVHFLVKD SDVFGAELIG EVVVPAEQLE AGEHVEGVYP VLDPAAGKPC APGAVLRLSV QYIPVARLTM YHHGVTPGPD FAGVPNTYFP
201: LRRGGRVTLY QDAHVPEGSL PEIRLGNGAL YRQGQCWHDV YDAISQARRL IYITGWSVFH TIQLVRDGGA GVSLGDLLKR KSQEGVRVLL LVWDDPTSRN
301: VLGIQMEGYM GTRDEETRRF FKHSSVQILL CPRSAGKRHS WVKQQETGTI FTHHQKTVIL DADAGNHKRK IVAFVGGLDL CGGRYDTPTH PLFRSLQTLH
401: KDDYYNPNFA VLDAQGPREP WHDLHSKIDG PAAYDVLTNF EERWLKASKR SGVKKLSKAN NDTLLWIGRI PDIASIDDEV YSSDNDPERW DVQIFRSIDS
501: NSVKGFPKNP REATSKNLVC GKNVLIDMSV QTAYVNAIRG AQHFIYIENQ YFLGSSFNWD SHKDVGANNL IPIEIALKIA NKIYANERFS AYIVIPMWPE
601: GNPTGAPTQR ILYWQKKTMQ MMYEVIHKAL KEVGLDNTYE PQDYLNFFCL GNREAGGSPS TCRGSSSANN PQDQAKKNRR FMVYVHSKGM IVDDEYVIIG
701: SANINQRSME GTRDTEIAMG AYQPQYTWAN MLSAPRGQIY GYRMSLWAEH IGAVEESFSC PESLECTRQV RHIGEQNWRQ FASSEVSEMR GHLVKYPVSV
801: ARDGKVKPLP GCAAFPDLGG NICGTFLPIQ ENLTI

Best Arabidopsis Sequence Match ( AT2G42010.1 )
(BLAST)

0001: MDNHGPRYPY PYGQYPYPYP YPAPYRPPSS EPYPPPPTNQ YSAPYYPYPP PPYATPPPYA SPPPPHQHTS GSHSGPLDYS HNPQPSSLAA APPEYHRHSF
0101: DYQPSPYPYQ PQGNFGAYGP PPPHYSYQEP AQYPPPETKP QEPLPPPQQT QGFQEYRRQD CLSTGGTGHD NVSNSGSSYP PVDELLGGLH ISTNQPGPSV
0201: PQLSSLPSNS WQSRPGDLYG YPNSSFPSNS HLPQLGRVDS SSSYYASTES PHSADMQMTL FGKGSLKVLL LHGNLDIWIY HAKNLPNMDM FHKTLGDMFG
0301: RLPGKIEGQL TSKITSDPYV SVSVAGAVIG RTYVMSNSEN PVWMQHFYVP VAHHAAEVHF VVKDSDVVGS QLIGLVTIPV EQIYSGAKIE GTYPILNSNG
0401: KPCKPGANLS LSIQYTPMDK LSVYHHGVGA GPDYQGVPGT YFPLRKGGTV RLYQDAHVPE GMLPGIRLDN GMSYEHGKCW HDMFDAIRQA RRLIYITGWS
0501: VWHKVKLIRD KLGPASECTL GELLRSKSQE GVRVLLLIWD DPTSRSILGY KTDGVMATHD EETRRFFKHS SVQVLLCPRN AGKRHSWVKQ REVGTIYTHH
0601: QKNVIVDADA GGNRRKIIAF VGGLDLCDGR YDTPQHPLFR TLQTIHKDDF HNPTFTGNLS GCPREPWHDL HSKIDGPAAY DVLTNFEERW LKAAKPSGIK
0701: KFKTSYDDAL LRIDRIPDIL GVSDTPTVSE NDPEAWHVQI FRSIDSNSVK GFPKDPKDAT CKNLVCGKNV LIDMSIHTAY VKAIRAAQHF IYIENQYFIG
0801: SSYNWNAHKD IGANNLIPME IALKIAEKIR ANERFAAYIV IPMWPEGVPT GAATQRILYW QHKTIQMMYE TIYKALVETG LEGAFSPQDY LNFFCLGNRE
0901: MVDGIDNSGT GSPSNANTPQ ALSRKSRRFM VYVHSKGMVV DDEYVVIGSA NINQRSMEGT RDTEIAMGAY QPQHTWARKH SGPRGQIYGY RMSLWAEHMA
1001: TLDDCFTQPE SIECVRKVRT MGERNWKQFA AEEVSDMRGH LLKYPVEVDR KGKVRPLPGS ETFPDVGGNI VGSFIAIQEN LTI

Arabidopsis Description

PLDBETA1phospholipase D beta 1 [Source:TAIR;Acc:AT2G42010]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.