Factsheet for Os06t0604300-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
extracellular 1
vacuole 2
endoplasmic reticulum 1
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 18260611
plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 18260611 doi

SH Natera, KL Ford, AM Cassin, JH Patterson, EJ Newbigin, A Bacic

Plant Cell Biology Research Centre, VIC, Australia. s.natera@unimelb.edu.au

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os06t0604200-02	Rice	cytosol, plasma membrane	83.49	84.5
Os06t0604400-01	Rice	plasma membrane	72.21	74.42
Zm00001d046508_P001	Maize	cytosol, mitochondrion, plasma membrane	70.78	73.04
EER88618	Sorghum	cytosol	70.55	72.79
TraesCSU01G145400.1	Wheat	cytosol	69.0	70.77
TraesCS4B01G377600.1	Wheat	cytosol	69.0	70.77
HORVU7Hr1G089960.3	Barley	cytosol	68.76	70.61
GSMUA_Achr10P...	Banana	cytosol, nucleus, peroxisome	14.49	70.52
TraesCS7D01G372800.1	Wheat	cytosol	68.65	70.49
TraesCS7A01G376500.3	Wheat	cytosol	68.53	70.37
TraesCS7B01G277900.1	Wheat	plastid	68.41	67.69
HORVU0Hr1G009480.5	Barley	extracellular, peroxisome	50.83	65.44
Os01t0172400-03	Rice	plastid	62.35	64.66
GSMUA_Achr10P...	Banana	cytosol	23.16	63.93
Os05t0171000-01	Rice	plasma membrane	61.52	62.86
Os03t0391400-01	Rice	plasma membrane	31.71	60.96
Os08t0401800-00	Rice	plasma membrane	45.72	47.83
Os09t0421300-01	Rice	cytosol	45.13	46.51
Os03t0119100-01	Rice	plasma membrane	43.59	43.95
Os07t0260400-01	Rice	cytosol, plasma membrane	43.35	43.56
Os09t0543100-02	Rice	plasma membrane	43.71	43.09
GSMUA_Achr6P35870_001	Banana	plasma membrane	41.45	36.7
Os10t0524400-01	Rice	plasma membrane	42.76	34.42
Os03t0840800-01	Rice	cytosol	13.54	32.11
Os02t0120200-01	Rice	extracellular	18.88	17.47
Os05t0358700-01	Rice	cytosol, plasma membrane	1.07	5.17

Protein Annotations

KEGG:00564+3.1.4.4	KEGG:00565+3.1.4.4	Gene3D:2.60.40.150	Gene3D:3.30.870.10	EntrezGene:4341468	MapMan:5.7.2.4.1
ProteinID:BAD35530.1	ProteinID:BAF19930.1	ProteinID:BAS98516.1	InterPro:C2_dom	InterPro:C2_domain_sf	ProteinID:EAZ37574.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0004630	GO:GO:0005488	GO:GO:0005509	GO:GO:0005575
GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016020
GO:GO:0016042	GO:GO:0016787	GO:GO:0046470	GO:GO:0070290	InterPro:IPR000008	InterPro:IPR001736
InterPro:IPR035892	EnsemblPlantsGene:Os06g0604300	EnsemblPlants:Os06t0604300-01	PFAM:PF00168	PFAM:PF00614	PFAM:PF12357
PIRSF:PIRSF036470	InterPro:PLipase_D/transphosphatidylase	InterPro:PLipase_D_C	InterPro:PLipase_D_fam	InterPro:PLipase_D_pln	PFscan:PS50035
PANTHER:PTHR18896	PANTHER:PTHR18896:SF59	UniProt:Q69X21	SMART:SM00155	SMART:SM00239	SUPFAM:SSF49562
SUPFAM:SSF56024	UniParc:UPI0000403812	RefSeq:XP_015641396.1	SEG:seg	:	:

Description

PHOSPHOLIPASE D ALPHA 5Chloroplast-localized phospholipase D, Herbivore defense (Os06t0604300-01)

Coordinates

chr6:+:23921940..23924919

Molecular Weight (calculated)

93241.4 Da

IEP (calculated)

6.324

GRAVY (calculated)

-0.307

Length

842 amino acids

Sequence
(BLAST)

001: MAHLLMHGTL DATIFEATNL TNPTRLTGNA PEGFRKWWEG LENGLEKTTG LGPGGTRLYA TVDLGRARLG RTRVIDDEPV SPRWDERFHF YCAHFAENVV
101: FSVKVALSVD AKLIGRAYLP VRDLLSGEAV ERKLDILGDD KKKLPHGPTI HVRLQFKDVA ADGGGKWWGG GVGDAAYPGV PCTYFKQHAG CRVTLYQDAH
201: APDTFAPRIP LAGGAHYQQG RCWEDVFDAI SNAKHLIYIT GWSVFTDITL IRDPSRQRPG GDATIGELLK RKASEGVRVL MLVWNDVSSI QALHAIGIKL
301: SVAQTHDEDT LAYFEDSDVH CVLCPRQADA AAGSSFIMGT KVSLLATHHQ KTVIVDHDMP AGTGGGGSDI RCIVSFVGGL DLCDGRYDTQ SHSLFRTLDA
401: AHHKDFHQPS IDDAELAKGG PREPWHDIHS KLEGPIAWDV LYNFEQRWRK QSGHADLLVN LTALEHLITP PSPVKLPGTN NDDHHDDAWN VQLFRSIDGG
501: ACDGFPSSPE AAARLDLVSG KNNVIERSIQ DAYIHAIRRA RDFIYIENQY FIGSSYGWRP GGGVRPEDVE AVNLIPRELS LKIVSKIAAG ERFAVYVVVP
601: MWPEGHPGNE AMQAILDWQR RTMEMMYYDI AVALKANHSD ADPRDYLTFF CLGNREAKSH GEYVPAHRPD QDTDYAKAQN ARRFMIYVHS KMMIVDDEYI
701: IVGSANINQR SMDGGRDSEI AMGAFQPHHL NVNGQAARGQ IHGFRMSLWY EHLGMLHDDF VHPGSLECVR RVNAMADRHW QLYAGEELHG DLPGHLLTYP
801: VAVEKDGGAV TALPGAEFFP DTEAKVIGTL ASSAYMIPYL TS

Best Arabidopsis Sequence Match ( AT1G52570.1 )
(BLAST)

001: MEECLLHGRL HATIYEVDHL HAEGGRSGFL GSILANVEET IGVGKGETQL YATIDLEKAR VGRTRKITKE PKNPKWFESF HIYCGHMAKH VIFTVKDANP
101: IGATLIGRGY IPVEDILHGE EVDRWVDILD NEKNPIAGGS KIHVKLQYFG VEKDKNWNRG IKSAKFPGVP YTFFSQRRGC KVSLYQDAHI PGNFVPKIPL
201: AGGKNYEPHR CWEDIFDAIT NAKHLIYITG WSVYTEISLV RDSRRPKQGG DVTVGELLKK KASEGVKVIL LVWDDRTSVD LLKKDGLMAT HDEETENFFR
301: GTDVNCILCP RNPDDGGSIV QNLQISTMFT HHQKIVVVDS EMPSGGSRSR RIVSFVGGLD LCDGRYDTPF HSLFRTLDTA HHDDFHQPNF TGAAITKGGP
401: REPWHDIHCR LEGPIAWDVL YNFEQRWSRQ GGKDILVKMR ELGDIIIPPS PVLFSEDHDV WNVQLFRSID GGAAAGFPDS PEAAAEAGLV SGKDNIIDRS
501: IQDAYIHAIR RAKDFIYIEN QYFLGSSFAW SADGIKPEEI NALHLIPKEL SLKIVSKIKA GEKFKVYVVV PMWPEGIPES GSVQAILDWQ KRTMEMMYKD
601: VIKALRENGL EGEDPRDYLT FFCLGNREVK KDGEYEPSEK PEPDTDYIRA QEARRFMIYV HTKMMIVDDE YIIIGSANIN QRSMDGARDS EIAMGGYQPY
701: HLSTRQPARG QIHGFRMSLW YEHLGMLDET FLDPSSQECI QKVNRVADKY WDLYSSESLE HDLPGHLLRY PIGIASEGNI TELPGCEFFP DTKARILGVK
801: SDYMPPILTT

Arabidopsis Description

PLDALPHA2Phospholipase D alpha 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SSQ9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.