Factsheet for TraesCS4D01G346700.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G11850.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT4G11850.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT4G11850.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G520900.1	Wheat	cytosol	97.83	97.83
TraesCS4B01G352300.1	Wheat	cytosol	98.68	95.68
HORVU4Hr1G085550.2	Barley	cytosol	93.62	93.62
KXG40331	Sorghum	cytosol	78.34	78.81
Zm00001d027386_P002	Maize	cytosol	77.62	77.34
Os03t0119100-01	Rice	plasma membrane	77.38	77.01
TraesCS1D01G189300.1	Wheat	cytosol	73.04	74.94
Zm00001d050470_P001	Maize	mitochondrion	34.78	72.61
PGSC0003DMT400000378	Potato	cytosol	22.5	71.37
PGSC0003DMT400026602	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	25.87	70.26
TraesCS1D01G370600.1	Wheat	cytosol	69.07	69.32
CDY41006	Canola	mitochondrion	13.0	69.23
GSMUA_Achr8P12030_001	Banana	plastid	64.38	66.54
KRG89825	Soybean	cytoskeleton, cytosol, peroxisome	23.23	66.32
Bra022740.1-P	Field mustard	cytosol, extracellular	9.99	65.87
CDY28756	Canola	cytosol, extracellular	9.99	65.87
CDY13283	Canola	mitochondrion	27.8	65.44
Bra000752.1-P	Field mustard	cytosol, nucleus, peroxisome	39.71	62.74
CDX86742	Canola	cytosol	63.42	62.22
Bra014871.1-P	Field mustard	cytosol	63.3	62.1
VIT_02s0025g04620.t01	Wine grape	cytosol	63.42	62.0
Solyc08g080130.2.1	Tomato	nucleus	62.82	61.7
PGSC0003DMT400058531	Potato	plastid	62.7	61.37
AT4G11850.1	Thale cress	cytosol	62.94	60.96
Zm00001d015818_P002	Maize	cytosol, nucleus, peroxisome	20.22	60.65
CDY64184	Canola	mitochondrion	59.45	60.61
CDX90807	Canola	cytosol	58.6	60.35
Solyc01g091910.2.1	Tomato	plastid	64.86	60.22
KRH77467	Soybean	nucleus	61.49	59.91
AT4G11830.2	Thale cress	cytosol	61.61	59.81
AT4G11840.1	Thale cress	cytosol	61.97	59.47
Bra000753.1-P	Field mustard	cytosol	56.08	58.69
CDX90808	Canola	cytosol	55.72	58.31
CDY13284	Canola	cytosol	32.01	57.95
AT4G00240.1	Thale cress	cytosol	63.54	56.96
KRG93706	Soybean	nucleus	19.74	56.36
CDX90066	Canola	cytosol	65.1	55.54
GSMUA_Achr5P20150_001	Banana	cytosol	66.06	55.07
CDY52961	Canola	cytosol, nucleus, peroxisome	64.26	53.83
KRH65182	Soybean	cytosol	48.74	53.36
KRH77470	Soybean	cytosol	8.78	53.28
CDY54926	Canola	cytosol, nucleus, peroxisome	64.14	53.14
TraesCS5D01G524600.1	Wheat	cytosol	51.87	51.31
CDY15144	Canola	peroxisome	65.34	51.03
KRH48290	Soybean	nucleus	64.02	50.81
TraesCS5D01G208300.2	Wheat	cytosol	51.62	50.77
Bra033225.1-P	Field mustard	cytosol	65.34	50.75
TraesCS5D01G341800.2	Wheat	cytosol	49.7	49.88
AT2G42010.2	Thale cress	peroxisome	64.86	48.65
KRH77469	Soybean	nucleus	4.09	48.57
VIT_15s0048g01160.t01	Wine grape	cytosol	63.42	48.48
CDY46254	Canola	cytosol	5.66	48.45
KRH01625	Soybean	cytosol	63.9	48.4
KRH70487	Soybean	cytosol	63.78	47.92
Solyc10g017650.1.1	Tomato	cytosol	63.3	47.01
TraesCS7D01G372800.1	Wheat	cytosol	45.25	45.85
TraesCS3D01G130900.1	Wheat	golgi	43.2	44.21
TraesCS1D01G116700.1	Wheat	cytosol	42.96	43.8
TraesCS1D01G035800.2	Wheat	cytosol	40.79	40.99
TraesCS7D01G531300.1	Wheat	cytosol	40.31	40.66
TraesCS7D01G531200.1	Wheat	cytosol	40.19	40.53
TraesCS1D01G379900.2	Wheat	cytosol	40.67	40.53
TraesCS5D01G231100.1	Wheat	cytosol	38.75	38.8
Bra008515.1-P	Field mustard	mitochondrion, plastid	64.26	36.83
TraesCS1D01G230100.1	Wheat	cytosol, nucleus, peroxisome	22.98	16.89

Protein Annotations

KEGG:00564+3.1.4.4	KEGG:00565+3.1.4.4	Gene3D:2.60.40.150	Gene3D:3.30.870.10	MapMan:5.7.2.4.2	InterPro:C2_dom
InterPro:C2_domain_sf	GO:GO:0003674	GO:GO:0003824	GO:GO:0004630	GO:GO:0005488	GO:GO:0005509
GO:GO:0005575	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020
GO:GO:0016787	GO:GO:0046470	InterPro:IPR000008	InterPro:IPR001736	InterPro:IPR035892	PFAM:PF00168
PFAM:PF00614	PFAM:PF12357	PIRSF:PIRSF036470	InterPro:PLipase_D/transphosphatidylase	InterPro:PLipase_D_C	InterPro:PLipase_D_fam
InterPro:PLipase_D_pln	PFscan:PS50004	PFscan:PS50035	PANTHER:PTHR18896	PANTHER:PTHR18896:SF61	SMART:SM00155
SMART:SM00239	SUPFAM:SSF49562	SUPFAM:SSF56024	EnsemblPlantsGene:TraesCS4D01G346700	EnsemblPlants:TraesCS4D01G346700.1	TIGR:cd04015

Description

No Description!

Coordinates

chr4D:+:500497923..500501538

Molecular Weight (calculated)

93173.4 Da

IEP (calculated)

6.969

GRAVY (calculated)

-0.377

Length

831 amino acids

Sequence
(BLAST)

001: MSDDEDCRTT AALLASTSSN HRAVLLHGSL DIWIDEACNL PNKDILSNTM GGLLKSCTSD PGSKSTSDPY VTVLVASATV ARTFVIQDDE NPKWRQHFLV
101: PVAHETAAVS FVVKDSDVIG AELIGAVAIP AESLLAGDRV DGVYPVLESS GKPCRPGATL RMSVQYVPVA RLTMYSHGVT PGPDFPGVPN TYFPLRRGGR
201: VTLYQDAHVP GDGQCLPEIR LGNGQLYRHG QCWHDVYDAM SQAKHLIYIT GWSVFHTIRL VRDGGDKARP LGDLLKKKSQ EGVRVLLLVW DDPTSRSVLG
301: IQMEGYMGTR DEETRRFFKH SSVQILLCSR SAGKRHSWVK QKETGTIFTH HQKTVIVDAD AGNGKRKIVA FVGGLDLCGG RYDTPRHNLF HTLHTVHKED
401: YYNPNFAVTD ERGPREPWHD LHSKIDGPAA FDVLKNFEER WSKSSKRHGS KKLSKSCNDT LLWIEKISEI AAIDDDVYSN DNDTERWDVQ IFRSIDSNSV
501: KAFPKDPREA TIQNLVCGKN VLIDMSIHTA YVTAIRAAQH FIYIENQYFL GSSFQWDSHR DLGANNLIPI EVALKIADKI YANERFSAYI IIPMWPEGNP
601: TGAPTQRILY WQKKTMQMMY EIIYKALKDT GLNGSYDPQD YLNFFCLGNR EAVENAAFSE AFSHTNPQDQ ARKNRRFMVY VHSKGMIVDD EYVIIGSANI
701: NQRSMEGTRD TEIAMGAYQP HYTWSNMFSA PRGQIYGYRM SLWAEHTGGV EAVFERPDTL ECVRRVRGIG DANWKRFVAE EVTEMRGHLI RYPVAVEWNG
801: KVGPLQGCAA FPDVGGNICG SFSGIQENLT I

Best Arabidopsis Sequence Match ( AT2G42010.1 )
(BLAST)

0001: MDNHGPRYPY PYGQYPYPYP YPAPYRPPSS EPYPPPPTNQ YSAPYYPYPP PPYATPPPYA SPPPPHQHTS GSHSGPLDYS HNPQPSSLAA APPEYHRHSF
0101: DYQPSPYPYQ PQGNFGAYGP PPPHYSYQEP AQYPPPETKP QEPLPPPQQT QGFQEYRRQD CLSTGGTGHD NVSNSGSSYP PVDELLGGLH ISTNQPGPSV
0201: PQLSSLPSNS WQSRPGDLYG YPNSSFPSNS HLPQLGRVDS SSSYYASTES PHSADMQMTL FGKGSLKVLL LHGNLDIWIY HAKNLPNMDM FHKTLGDMFG
0301: RLPGKIEGQL TSKITSDPYV SVSVAGAVIG RTYVMSNSEN PVWMQHFYVP VAHHAAEVHF VVKDSDVVGS QLIGLVTIPV EQIYSGAKIE GTYPILNSNG
0401: KPCKPGANLS LSIQYTPMDK LSVYHHGVGA GPDYQGVPGT YFPLRKGGTV RLYQDAHVPE GMLPGIRLDN GMSYEHGKCW HDMFDAIRQA RRLIYITGWS
0501: VWHKVKLIRD KLGPASECTL GELLRSKSQE GVRVLLLIWD DPTSRSILGY KTDGVMATHD EETRRFFKHS SVQVLLCPRN AGKRHSWVKQ REVGTIYTHH
0601: QKNVIVDADA GGNRRKIIAF VGGLDLCDGR YDTPQHPLFR TLQTIHKDDF HNPTFTGNLS GCPREPWHDL HSKIDGPAAY DVLTNFEERW LKAAKPSGIK
0701: KFKTSYDDAL LRIDRIPDIL GVSDTPTVSE NDPEAWHVQI FRSIDSNSVK GFPKDPKDAT CKNLVCGKNV LIDMSIHTAY VKAIRAAQHF IYIENQYFIG
0801: SSYNWNAHKD IGANNLIPME IALKIAEKIR ANERFAAYIV IPMWPEGVPT GAATQRILYW QHKTIQMMYE TIYKALVETG LEGAFSPQDY LNFFCLGNRE
0901: MVDGIDNSGT GSPSNANTPQ ALSRKSRRFM VYVHSKGMVV DDEYVVIGSA NINQRSMEGT RDTEIAMGAY QPQHTWARKH SGPRGQIYGY RMSLWAEHMA
1001: TLDDCFTQPE SIECVRKVRT MGERNWKQFA AEEVSDMRGH LLKYPVEVDR KGKVRPLPGS ETFPDVGGNI VGSFIAIQEN LTI

Arabidopsis Description

PLDBETA1phospholipase D beta 1 [Source:TAIR;Acc:AT2G42010]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.