CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 5
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX89318
CDX94304
CDX97358

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G11850.1	CDX89318	AT4G26630.1	25387881
AT4G11850.1	CDX94304	AT4G26630.1	25387881
AT4G11850.1	CDX97358	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY41006	Canola	mitochondrion	42.78	96.79
CDY28756	Canola	cytosol, extracellular	30.88	86.51
CDY46254	Canola	cytosol	21.53	78.35
CDY51545	Canola	cytosol	23.8	58.74
KRH77470	Soybean	cytosol	21.81	56.2
Zm00001d015818_P002	Maize	cytosol, nucleus, peroxisome	38.53	49.1
CDY20149	Canola	cytosol, nucleus, peroxisome	28.61	47.42
CDY70643	Canola	cytosol, peroxisome	27.48	45.54
CDX86742	Canola	cytosol	98.58	41.09
Bra014871.1-P	Field mustard	cytosol	98.3	40.97
AT4G11850.1	Thale cress	cytosol	94.33	38.81
AT4G11840.1	Thale cress	cytosol	92.92	37.88
AT4G11830.2	Thale cress	cytosol	91.22	37.62
CDX90808	Canola	cytosol	82.15	36.52
CDX90807	Canola	cytosol	81.3	35.56
CDY64184	Canola	mitochondrion	78.75	34.11
Zm00001d015256_P001	Maize	cytosol	37.68	32.13
GSMUA_Achr8P12030_001	Banana	plastid	69.69	30.6
TraesCS1D01G189300.1	Wheat	cytosol	69.97	30.49
TraesCS1B01G195200.1	Wheat	cytosol	69.69	30.37
Solyc08g080130.2.1	Tomato	nucleus	71.95	30.02
PGSC0003DMT400058531	Potato	plastid	71.95	29.92
VIT_02s0025g04620.t01	Wine grape	cytosol	71.67	29.76
KXG40331	Sorghum	cytosol	67.42	28.81
Os03t0119100-01	Rice	plasma membrane	67.99	28.74
Zm00001d027386_P002	Maize	cytosol	67.42	28.54
KRH77467	Soybean	nucleus	68.56	28.37
HORVU4Hr1G085550.2	Barley	cytosol	66.57	28.28
TraesCS1A01G365100.2	Wheat	mitochondrion	66.29	28.26
TraesCS1D01G370600.1	Wheat	cytosol	66.29	28.26
HORVU1Hr1G079150.1	Barley	cytosol	66.29	28.26
GSMUA_Achr4P24890_001	Banana	cytosol, plastid	70.54	28.14
TraesCS1B01G382600.1	Wheat	mitochondrion	65.72	28.02
TraesCS5A01G520900.1	Wheat	cytosol	65.72	27.92
TraesCS4D01G346700.1	Wheat	cytosol	65.44	27.8
TraesCS4B01G352300.1	Wheat	cytosol	65.16	26.84
CDY42882	Canola	nucleus	23.23	25.47
CDX90066	Canola	cytosol	69.69	25.26
GSMUA_Achr5P20150_001	Banana	cytosol	69.41	24.57
CDY52961	Canola	cytosol, nucleus, peroxisome	68.56	24.4
CDY54926	Canola	cytosol, nucleus, peroxisome	68.56	24.13
CDX88175	Canola	cytosol	49.58	23.62
Os10t0524400-01	Rice	plasma membrane	69.97	23.61
Zm00001d029684_P001	Maize	peroxisome	69.97	23.57
EER92041	Sorghum	cytosol, nucleus, peroxisome	69.69	23.36
CDY15144	Canola	peroxisome	69.69	23.12
TraesCS1A01G187400.1	Wheat	peroxisome	70.25	22.4
HORVU1Hr1G048970.1	Barley	cytosol, nucleus, peroxisome	70.25	22.36
CDX72557	Canola	cytosol	54.67	22.31
CDY35793	Canola	cytosol	54.39	22.2
CDX80505	Canola	cytosol	49.01	22.18
CDY47037	Canola	cytosol	55.52	22.15
CDY41630	Canola	cytosol	54.39	22.15
CDY67335	Canola	cytosol	53.82	21.94
CDY30108	Canola	cytosol	48.73	21.23
CDY05351	Canola	cytosol	49.01	21.23
CDX97705	Canola	cytosol	48.44	21.11
CDY05490	Canola	cytosol	48.73	21.1
CDY60551	Canola	cytosol	47.88	20.81
CDY47540	Canola	cytosol	47.88	20.81
CDY21865	Canola	cytosol	46.74	20.32
CDY24051	Canola	cytosol	42.78	19.92
CDY33065	Canola	cytosol	42.21	19.66
KRG93706	Soybean	nucleus	13.6	16.49
Zm00001d050470_P001	Maize	mitochondrion	16.15	14.32
CDX80734	Canola	cytosol	3.12	9.09
CDX92096	Canola	nucleus	24.36	7.95
CDY18811	Canola	cytosol, nucleus, peroxisome	23.23	7.83
CDX95904	Canola	cytosol, nucleus, peroxisome	24.08	7.81
CDY20148	Canola	cytosol, peroxisome, plastid	2.83	2.51
CDY13284	Canola	cytosol	1.7	1.31
CDY51604	Canola	cytosol	0.28	0.35
CDX87920	Canola	cytosol	0.28	0.29
KRH77469	Soybean	nucleus	0.0	0.0
CDY63527	Canola	cytosol	0.0	0.0

Protein Annotations

KEGG:00564+3.1.4.4	KEGG:00565+3.1.4.4	Gene3D:3.30.870.10	MapMan:50.3.1	GO:A0A078FLW2	UniProt:A0A078FLW2
EnsemblPlants:CDY13283	ProteinID:CDY13283	ProteinID:CDY13283.1	GO:GO:0003674	GO:GO:0003824	EnsemblPlantsGene:GSBRNA2T00071251001
InterPro:IPR001736	PFAM:PF00614	PFAM:PF12357	InterPro:PLipase_D/transphosphatidylase	InterPro:PLipase_D_C	InterPro:PLipase_D_fam
PFscan:PS50035	PANTHER:PTHR18896	PANTHER:PTHR18896:SF65	MetaCyc:PWY-3561	MetaCyc:PWY-7039	SMART:SM00155
SUPFAM:SSF56024	UniParc:UPI0004EE9EBE	:	:	:	:

Description

BnaC09g23730DBnaC09g23730D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FLW2]

Coordinates

chrLK032033:-:677830..679815

Molecular Weight (calculated)

40052.4 Da

IEP (calculated)

9.003

GRAVY (calculated)

-0.320

Length

353 amino acids

Sequence
(BLAST)

001: MRMIQRLGML SSVKGFPKDP KEATGRNLLC GKNILIDMSI HAAYVKAIRS AQHFIYIENQ YFLGSSFNWD SNKDLGANNL IPIEIALKIA NKIRAREKFA
101: AYIVIPMWPE GAPTSNPIQR ILYWQHKTMQ MMYQTIHKAL VEVGLDGQYE PQDFLNFFCL GTREVADGTV SVYNSPRTPP KSNANANAIQ VQALKSRRFM
201: IYVHSKGMVV DDEFVLIGSA NINQRSLEGT RDTEIAMGGY QPHHSWAKKG SRPRGQIFGY RMSLWAEHLG FLEQGFEEPE NMECVRRVRQ LSELNWRQYA
301: AEEVTEMQGH LLKYPVQVDR TGKVSSLPGC ETFPDLGGKI IGSFLALQEN LTI

Best Arabidopsis Sequence Match ( AT4G11830.1 )
(BLAST)

001: MSMGGGSNHE FGQWLDQQLV PLATSSGSLM VELLHGRRIR KVDGEKSSKF TSDPYVTVSI SGAVIGRTFV ISNSENPVWM QHFDVPVAHS AAEVHFVVKD
101: NDPIGSKIIG VVGIPTKQLC SGNRIEGLFP ILNSSGKPCR KGAMLSLSIQ YTPMERMRLY QKGVGSGVEC VGVPGTYFPL RKGGRVTLYQ DAHVDDGTLP
201: SVHLDGGIQY RHGKCWEDMA DAIRRARRLI YITGWSVFHP VRLVRRNNDP TEGTLGELLK VKSQEGVRVL VLVWDDPTSM SFPGFSTKGL MNTSDEETRR
301: FFKHSSVQVL LCPRYGGKGH SFIKKSEVET IYTHHQKTMI VDAEAAQNRR KIVAFVGGLD LCNGRFDTPK HSLFGTLKTL HKDDFHNPNF VTTEDVGPRE
401: PWHDLHSKID GPAAYDVLAN FEERWMASKP RGIGKGRTSF DDSLLRINRI PDIMGLSEAS SANDNDPESW HVQVFRSIDS TSVKGFPKDP EEATGRNLLC
501: GKNILIDMSI HAAYVKAIRS AQHFIYIENQ YFLGSSFNWD SNKDLGANNL IPMEIALKIA NKIRARENFA AYIVIPMWPE GAPTSKPIQR ILYWQHKTMQ
601: MMYQTIYKAL LEVGLDGQLE PQDFLNFFCL GNREVGTREV PDGTVNVYNC PRKPPQPNAA QVQALKSRRF MIYVHSKGMV VDDEFVLIGS ANINQRSLEG
701: TRDTEIAMGG YQPHHSWAKK GSRPRGQIFG YRMSLWAEHL GFLEQEFEEP ENMECVRRVR QLSELNWGQY AAEEVTEMSG HLLKYPVQVD KTGKVSSLPG
801: CETFPDLGGK IIGSFLTLQE NLTI

Arabidopsis Description

PLDGAMMA2Phospholipase D gamma 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9T051]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.