Factsheet for TraesCS1D01G189300.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, secretory
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G11850.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT4G11850.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT4G11850.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G195200.1	Wheat	cytosol	98.89	98.89
TraesCS1D01G370600.1	Wheat	cytosol	83.95	82.13
PGSC0003DMT400000378	Potato	cytosol	24.44	75.57
PGSC0003DMT400026602	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	27.65	73.2
TraesCS4D01G346700.1	Wheat	cytosol	74.94	73.04
TraesCS1A01G187400.1	Wheat	peroxisome	99.51	72.81
GSMUA_Achr8P12030_001	Banana	plastid	71.73	72.26
HORVU1Hr1G048970.1	Barley	cytosol, nucleus, peroxisome	98.02	71.6
CDY41006	Canola	mitochondrion	13.7	71.15
CDY13283	Canola	mitochondrion	30.49	69.97
Bra022740.1-P	Field mustard	cytosol, extracellular	10.62	68.25
CDY28756	Canola	cytosol, extracellular	10.62	68.25
EER92041	Sorghum	cytosol, nucleus, peroxisome	88.64	68.19
KRG89825	Soybean	cytoskeleton, cytosol, peroxisome	24.32	67.7
Os10t0524400-01	Rice	plasma membrane	87.16	67.5
Bra000752.1-P	Field mustard	cytosol, nucleus, peroxisome	43.83	67.49
VIT_02s0025g04620.t01	Wine grape	cytosol	70.74	67.41
Solyc08g080130.2.1	Tomato	nucleus	69.51	66.55
PGSC0003DMT400058531	Potato	plastid	69.63	66.43
CDX86742	Canola	cytosol	69.26	66.23
Bra014871.1-P	Field mustard	cytosol	69.14	66.12
AT4G11850.1	Thale cress	cytosol	69.14	65.27
KRH77467	Soybean	nucleus	67.9	64.48
Solyc01g091910.2.1	Tomato	plastid	70.99	64.25
CDX90807	Canola	cytosol	63.33	63.57
CDY64184	Canola	mitochondrion	63.95	63.56
AT4G11840.1	Thale cress	cytosol	67.41	63.05
AT4G11830.2	Thale cress	cytosol	66.54	62.97
AT4G00240.1	Thale cress	cytosol	70.37	61.49
KRG93706	Soybean	nucleus	21.73	60.48
CDX90808	Canola	cytosol	59.14	60.33
Bra000753.1-P	Field mustard	cytosol	59.14	60.33
GSMUA_Achr5P20150_001	Banana	cytosol	74.2	60.28
CDY13284	Canola	cytosol	34.07	60.13
KRH77469	Soybean	nucleus	5.19	60.0
CDX90066	Canola	cytosol	71.85	59.75
KRH77470	Soybean	cytosol	10.0	59.12
CDY52961	Canola	cytosol, nucleus, peroxisome	70.12	57.26
CDY54926	Canola	cytosol, nucleus, peroxisome	70.25	56.73
KRH65182	Soybean	cytosol	53.09	56.65
CDY15144	Canola	peroxisome	72.22	54.98
Bra033225.1-P	Field mustard	cytosol	72.22	54.67
KRH48290	Soybean	nucleus	70.12	54.25
CDY46254	Canola	cytosol	6.42	53.61
VIT_15s0048g01160.t01	Wine grape	cytosol	71.6	53.36
AT2G42010.2	Thale cress	peroxisome	72.59	53.07
KRH01625	Soybean	cytosol	71.23	52.6
KRH70487	Soybean	cytosol	70.74	51.81
TraesCS5D01G524600.1	Wheat	cytosol	52.72	50.83
TraesCS5D01G208300.2	Wheat	cytosol	52.72	50.53
TraesCS5D01G341800.2	Wheat	cytosol	50.99	49.88
Solyc10g017650.1.1	Tomato	cytosol	68.64	49.69
TraesCS7D01G372800.1	Wheat	cytosol	46.05	45.49
TraesCS3D01G130900.1	Wheat	golgi	45.19	45.07
TraesCS1D01G116700.1	Wheat	cytosol	45.31	45.03
TraesCS1D01G379900.2	Wheat	cytosol	43.09	41.85
TraesCS1D01G035800.2	Wheat	cytosol	41.73	40.87
TraesCS7D01G531300.1	Wheat	cytosol	41.23	40.53
TraesCS7D01G531200.1	Wheat	cytosol	40.25	39.56
Bra008515.1-P	Field mustard	mitochondrion, plastid	70.37	39.31
TraesCS5D01G231100.1	Wheat	cytosol	39.75	38.8
TraesCS1D01G230100.1	Wheat	cytosol, nucleus, peroxisome	24.07	17.24

Protein Annotations

KEGG:00564+3.1.4.4	KEGG:00565+3.1.4.4	Gene3D:2.60.40.150	Gene3D:3.30.870.10	MapMan:5.7.2.4.2	InterPro:C2_dom
InterPro:C2_domain_sf	GO:GO:0003674	GO:GO:0003824	GO:GO:0004630	GO:GO:0005488	GO:GO:0005509
GO:GO:0005575	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020
GO:GO:0016787	GO:GO:0046470	InterPro:IPR000008	InterPro:IPR001736	InterPro:IPR035892	PFAM:PF00168
PFAM:PF00614	PFAM:PF12357	PIRSF:PIRSF036470	InterPro:PLipase_D/transphosphatidylase	InterPro:PLipase_D_C	InterPro:PLipase_D_fam
InterPro:PLipase_D_pln	PFscan:PS50004	PFscan:PS50035	PANTHER:PTHR18896	PANTHER:PTHR18896:SF61	SMART:SM00155
SMART:SM00239	SUPFAM:SSF49562	SUPFAM:SSF56024	EnsemblPlantsGene:TraesCS1D01G189300	EnsemblPlants:TraesCS1D01G189300.1	TIGR:cd04015
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr1D:-:261736921..261741859

Molecular Weight (calculated)

91722.6 Da

IEP (calculated)

7.849

GRAVY (calculated)

-0.380

Length

810 amino acids

Sequence
(BLAST)

001: MRASLKVVLL HGSLDIWVHE AKNLPNKDMF SKRVSELLSV GGKSNSKMTS DPYVTIQVSY ATVARTYVVS NSENPVWAQN FHVPVGHEAA EVEFVVKDSD
101: VFGAQLMGTV AIPAENLLSG DRIEGIYPVL EPNGKPCAPG AVLQLSIQYI PVARLTMYHH GVIAGPDCLG VPNTYFPLRR GMRVTLYQDA HVPDGSLPDI
201: WLDHGLRYQH GQCWRDMYNA ISQARRLIYI VGWSVFHTID LIRDGAEKAP SLGDLLKMKS QEGVRVLLLV WDDPTSRSIL GFKMDGFMGT RDEETRRFFK
301: HSSVQVLLCP RSAGKRHSWV KQQETGTIFT HHQKTVIVDA DAGNYRRKII AFVGGLDLCG GRYDTPGHPL FQTLQTSHKE DYYNPNFATV DARGPREPWH
401: DLHSRIDGPA AYDVLKNFEE RWLKASKRHG IKKLGKSNDD ALLKIERIHD IVNIDDAIYF SDNDPETWHV QVFRSIDSNS AKGFPKDPRV ATMKNLVCGK
501: NVLIDMSIHT AYVNAIRAAQ HFIYIENQYF IGSSFNWDSN KDIGANNLVP IEIALKIANK IKAKERFSAY IVVPMWPEGN PTGAPTQRIL YWQNKTMQMM
601: YETIYRALKE VGLDDKYEPQ DYLNFFCLGN REIGDSPSTP STANNPQDQA RKNRRFMVYV HSKGMIVDDE YVIIGSANIN QRSMEGIRDT EIAMGAYQPQ
701: YTWANKISAP RGQIYGYRMS LWAEHIGIIE EDFNHPESLE CMRRVRQLGQ HNWDQFFANE VTEMRGHLLK YPVSVDRKGK VKPLPGCATF PDMGGNICGS
801: FTAIQENLTI

Best Arabidopsis Sequence Match ( AT2G42010.1 )
(BLAST)

0001: MDNHGPRYPY PYGQYPYPYP YPAPYRPPSS EPYPPPPTNQ YSAPYYPYPP PPYATPPPYA SPPPPHQHTS GSHSGPLDYS HNPQPSSLAA APPEYHRHSF
0101: DYQPSPYPYQ PQGNFGAYGP PPPHYSYQEP AQYPPPETKP QEPLPPPQQT QGFQEYRRQD CLSTGGTGHD NVSNSGSSYP PVDELLGGLH ISTNQPGPSV
0201: PQLSSLPSNS WQSRPGDLYG YPNSSFPSNS HLPQLGRVDS SSSYYASTES PHSADMQMTL FGKGSLKVLL LHGNLDIWIY HAKNLPNMDM FHKTLGDMFG
0301: RLPGKIEGQL TSKITSDPYV SVSVAGAVIG RTYVMSNSEN PVWMQHFYVP VAHHAAEVHF VVKDSDVVGS QLIGLVTIPV EQIYSGAKIE GTYPILNSNG
0401: KPCKPGANLS LSIQYTPMDK LSVYHHGVGA GPDYQGVPGT YFPLRKGGTV RLYQDAHVPE GMLPGIRLDN GMSYEHGKCW HDMFDAIRQA RRLIYITGWS
0501: VWHKVKLIRD KLGPASECTL GELLRSKSQE GVRVLLLIWD DPTSRSILGY KTDGVMATHD EETRRFFKHS SVQVLLCPRN AGKRHSWVKQ REVGTIYTHH
0601: QKNVIVDADA GGNRRKIIAF VGGLDLCDGR YDTPQHPLFR TLQTIHKDDF HNPTFTGNLS GCPREPWHDL HSKIDGPAAY DVLTNFEERW LKAAKPSGIK
0701: KFKTSYDDAL LRIDRIPDIL GVSDTPTVSE NDPEAWHVQI FRSIDSNSVK GFPKDPKDAT CKNLVCGKNV LIDMSIHTAY VKAIRAAQHF IYIENQYFIG
0801: SSYNWNAHKD IGANNLIPME IALKIAEKIR ANERFAAYIV IPMWPEGVPT GAATQRILYW QHKTIQMMYE TIYKALVETG LEGAFSPQDY LNFFCLGNRE
0901: MVDGIDNSGT GSPSNANTPQ ALSRKSRRFM VYVHSKGMVV DDEYVVIGSA NINQRSMEGT RDTEIAMGAY QPQHTWARKH SGPRGQIYGY RMSLWAEHMA
1001: TLDDCFTQPE SIECVRKVRT MGERNWKQFA AEEVSDMRGH LLKYPVEVDR KGKVRPLPGS ETFPDVGGNI VGSFIAIQEN LTI

Arabidopsis Description

PLDBETA1phospholipase D beta 1 [Source:TAIR;Acc:AT2G42010]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.