Factsheet for TraesCS1A01G187400.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

peroxisome 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	mitochondrion, peroxisome
MultiLoc:	peroxisome
PProwler:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G11850.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT4G11850.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT4G11850.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G189300.1	Wheat	cytosol	72.81	99.51
TraesCS1B01G195200.1	Wheat	cytosol	72.18	98.64
HORVU1Hr1G048970.1	Barley	cytosol, nucleus, peroxisome	94.76	94.59
TraesCS1A01G365100.2	Wheat	mitochondrion	61.97	82.85
Os10t0524400-01	Rice	plasma membrane	75.61	80.02
EER92041	Sorghum	cytosol, nucleus, peroxisome	75.52	79.39
PGSC0003DMT400000378	Potato	cytosol	17.98	75.95
TraesCS5A01G520900.1	Wheat	cytosol	55.37	73.77
PGSC0003DMT400026602	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	20.33	73.53
GSMUA_Achr8P12030_001	Banana	plastid	53.39	73.51
CDY41006	Canola	mitochondrion	10.12	71.79
CDY13283	Canola	mitochondrion	22.4	70.25
Bra022740.1-P	Field mustard	cytosol, extracellular	7.86	69.05
CDY28756	Canola	cytosol, extracellular	7.86	69.05
KRG89825	Soybean	cytoskeleton, cytosol, peroxisome	17.98	68.38
VIT_02s0025g04620.t01	Wine grape	cytosol	52.12	67.88
Solyc08g080130.2.1	Tomato	nucleus	51.76	67.73
Bra000752.1-P	Field mustard	cytosol, nucleus, peroxisome	32.16	67.68
PGSC0003DMT400058531	Potato	plastid	51.85	67.61
CDX86742	Canola	cytosol	51.04	66.71
GSMUA_Achr5P20150_001	Banana	cytosol	60.07	66.7
Bra014871.1-P	Field mustard	cytosol	50.95	66.59
AT4G11850.1	Thale cress	cytosol	51.04	65.85
KRH77467	Soybean	nucleus	50.5	65.53
Solyc01g091910.2.1	Tomato	plastid	52.85	65.36
AT4G00240.1	Thale cress	cytosol	54.29	64.83
CDX90066	Canola	cytosol	56.55	64.27
CDX90807	Canola	cytosol	46.7	64.06
CDY64184	Canola	mitochondrion	47.06	63.93
AT4G11840.1	Thale cress	cytosol	49.77	63.63
AT4G11830.2	Thale cress	cytosol	49.14	63.55
CDY52961	Canola	cytosol, nucleus, peroxisome	55.47	61.9
CDY54926	Canola	cytosol, nucleus, peroxisome	55.92	61.71
CDX90808	Canola	cytosol	43.63	60.83
Bra000753.1-P	Field mustard	cytosol	43.63	60.83
CDY13284	Canola	cytosol	25.2	60.78
KRG93706	Soybean	nucleus	15.9	60.48
CDY15144	Canola	peroxisome	57.99	60.34
KRH65182	Soybean	cytosol	41.19	60.08
KRH77469	Soybean	nucleus	3.79	60.0
Bra033225.1-P	Field mustard	cytosol	57.99	60.0
KRH77470	Soybean	cytosol	7.41	59.85
VIT_15s0048g01160.t01	Wine grape	cytosol	57.63	58.69
KRH48290	Soybean	nucleus	55.28	58.45
KRH01625	Soybean	cytosol	57.81	58.34
AT2G42010.2	Thale cress	peroxisome	58.27	58.21
KRH70487	Soybean	cytosol	57.36	57.41
Solyc10g017650.1.1	Tomato	cytosol	54.29	53.71
CDY46254	Canola	cytosol	4.7	53.61
TraesCS5A01G337100.2	Wheat	cytosol	40.11	51.51
TraesCS5A01G202000.1	Wheat	cytosol	38.75	51.13
TraesCS4A01G338500.1	Wheat	cytosol	5.42	46.88
TraesCS4A01G347800.3	Wheat	cytosol, nucleus, peroxisome	27.37	46.83
TraesCS7A01G376500.3	Wheat	cytosol	33.78	45.61
TraesCS3A01G130000.1	Wheat	plastid	33.24	45.32
TraesCS1A01G115300.1	Wheat	cytosol	32.88	44.66
TraesCS6A01G071700.1	Wheat	cytosol, nucleus, plastid	33.6	42.81
Bra008515.1-P	Field mustard	mitochondrion, plastid	55.83	42.62
TraesCS1A01G373100.2	Wheat	plastid	31.26	41.54
TraesCS7A01G545000.1	Wheat	cytosol	29.72	39.83
TraesCS5A01G223500.1	Wheat	cytosol	29.18	39.1
TraesCS7A01G544900.1	Wheat	cytosol	27.28	39.02
TraesCS1A01G228300.1	Wheat	cytosol, nucleus, peroxisome	17.25	17.16

Protein Annotations

KEGG:00564+3.1.4.4	KEGG:00565+3.1.4.4	Gene3D:2.60.40.150	Gene3D:3.30.870.10	MapMan:5.7.2.4.2	InterPro:C2_dom
InterPro:C2_domain_sf	GO:GO:0003674	GO:GO:0003824	InterPro:IPR000008	InterPro:IPR001736	InterPro:IPR035892
PFAM:PF00168	PFAM:PF00614	PFAM:PF12357	InterPro:PLipase_D/transphosphatidylase	InterPro:PLipase_D_C	InterPro:PLipase_D_fam
PFscan:PS50004	PFscan:PS50035	PANTHER:PTHR18896	PANTHER:PTHR18896:SF61	SMART:SM00155	SMART:SM00239
SUPFAM:SSF49562	SUPFAM:SSF56024	EnsemblPlantsGene:TraesCS1A01G187400	EnsemblPlants:TraesCS1A01G187400.1	TIGR:cd04015	SEG:seg

Description

No Description!

Coordinates

chr1A:+:338581948..338588145

Molecular Weight (calculated)

121588.0 Da

IEP (calculated)

7.314

GRAVY (calculated)

-0.520

Length

1107 amino acids

Sequence
(BLAST)

0001: MEGSNHGGQG QPPHQYHQYP PHPQPEPYPY AYQHQQYPPP SAAPPSHYLA PSTSFPAYSP APPQQFAHHS GPLQPYPPPA PHQQQAYPPH PQHAYPPHSQ
0101: QHGYPPPPSP SPYGYDPYPA YPSYPSPAHP SYPSPAISPS SSFHHQPHPS APDPTAASYP SPAISHSSSF HHQPHPSGPA ASXXXXXXXX XXXXXXXQPH
0201: PSAPESPAAY YPSPAISPSS SFHHQPHASA PESPAASTPH YPIVDGFANM HLSGRHDYTP APMSSPSVLP HSASFSNGGG MQMVPYGTVA GGSQHGSTRA
0301: SLKVVLLHGS LDIWVHEAKN LPNKDMFSKR VSELLSVGGK SNSKMTSDPY VTIQVSYATV ARTYVVSNSE NPVWAQNFHV PVGHEAAEVE FVVKDSDVFG
0401: AQLMGTVAIP AENLLSGDRI EGIYPVLEPN GKPCAPGAVL QLSIQYIPVA RLTMYHHGVI AGPDCLGVPN TYFPLRRGMR VTLYQDAHVP DGSLPDIWLD
0501: HGLRYQHGQC WRDMYNAISQ ARRLIYIVGW SVFHTIDLIR DGAEKAPSLG DLLKMKSQEG VRVLLLVWDD PTSRSILGFK MDGFMGTRDE ETRRFFKHSS
0601: VQVLLCPRSA GKRHSWVKQQ ETGTIFTHHQ KTVIVDADAG NYRRKIIAFV GGLDLCGGRY DTPGHPLFQT LQTSHKEDYY NPNFATVDAR GPREPWHDLH
0701: SRIDGPAAYD VLKNFEERWL KASKRHGIKK LGKSNDDALL KIERIHDIVN IDDAIYFSDN DPETWHVQVF RSIDSNSAKG FPKDPRVATM KNLVCGKNVL
0801: IDMSIHTAYV NAIRAAQHFI YIENQYFIGS SFNWDSNKDI GANNLVPIEI ALKIANKIKA KERFSAYIVV PMWPEGNPTG APTQRILYWQ NKTMQMMYET
0901: IYKALKEVGL DDIYEPQDYL NFFCLGNREI GDSPSTPSTA NNPQDQARKN RRFMVYVHSK GMIVDDEYVI IGSANINQRS MEGIRDTEIA MGAYQPQYTW
1001: ANKISAPRGQ IYGYRMSLWA EHIGIIEEEF NHPESLECMR RVRQLGQHNW DQFFANEVTE MRGHLLKYPV SVDRKGKVKP LPGCATFPDM GGNICGSFTA
1101: IQENLTI

Best Arabidopsis Sequence Match ( AT2G42010.1 )
(BLAST)

0001: MDNHGPRYPY PYGQYPYPYP YPAPYRPPSS EPYPPPPTNQ YSAPYYPYPP PPYATPPPYA SPPPPHQHTS GSHSGPLDYS HNPQPSSLAA APPEYHRHSF
0101: DYQPSPYPYQ PQGNFGAYGP PPPHYSYQEP AQYPPPETKP QEPLPPPQQT QGFQEYRRQD CLSTGGTGHD NVSNSGSSYP PVDELLGGLH ISTNQPGPSV
0201: PQLSSLPSNS WQSRPGDLYG YPNSSFPSNS HLPQLGRVDS SSSYYASTES PHSADMQMTL FGKGSLKVLL LHGNLDIWIY HAKNLPNMDM FHKTLGDMFG
0301: RLPGKIEGQL TSKITSDPYV SVSVAGAVIG RTYVMSNSEN PVWMQHFYVP VAHHAAEVHF VVKDSDVVGS QLIGLVTIPV EQIYSGAKIE GTYPILNSNG
0401: KPCKPGANLS LSIQYTPMDK LSVYHHGVGA GPDYQGVPGT YFPLRKGGTV RLYQDAHVPE GMLPGIRLDN GMSYEHGKCW HDMFDAIRQA RRLIYITGWS
0501: VWHKVKLIRD KLGPASECTL GELLRSKSQE GVRVLLLIWD DPTSRSILGY KTDGVMATHD EETRRFFKHS SVQVLLCPRN AGKRHSWVKQ REVGTIYTHH
0601: QKNVIVDADA GGNRRKIIAF VGGLDLCDGR YDTPQHPLFR TLQTIHKDDF HNPTFTGNLS GCPREPWHDL HSKIDGPAAY DVLTNFEERW LKAAKPSGIK
0701: KFKTSYDDAL LRIDRIPDIL GVSDTPTVSE NDPEAWHVQI FRSIDSNSVK GFPKDPKDAT CKNLVCGKNV LIDMSIHTAY VKAIRAAQHF IYIENQYFIG
0801: SSYNWNAHKD IGANNLIPME IALKIAEKIR ANERFAAYIV IPMWPEGVPT GAATQRILYW QHKTIQMMYE TIYKALVETG LEGAFSPQDY LNFFCLGNRE
0901: MVDGIDNSGT GSPSNANTPQ ALSRKSRRFM VYVHSKGMVV DDEYVVIGSA NINQRSMEGT RDTEIAMGAY QPQHTWARKH SGPRGQIYGY RMSLWAEHMA
1001: TLDDCFTQPE SIECVRKVRT MGERNWKQFA AEEVSDMRGH LLKYPVEVDR KGKVRPLPGS ETFPDVGGNI VGSFIAIQEN LTI

Arabidopsis Description

PLDBETA1phospholipase D beta 1 [Source:TAIR;Acc:AT2G42010]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.