CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX89318
CDX94304
CDX97358

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G11850.1	CDX89318	AT4G26630.1	25387881
AT4G11850.1	CDX94304	AT4G26630.1	25387881
AT4G11850.1	CDX97358	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY28756	Canola	cytosol, extracellular	69.23	85.71
CDY51545	Canola	cytosol	39.74	43.36
CDY13283	Canola	mitochondrion	96.79	42.78
Zm00001d015818_P002	Maize	cytosol, nucleus, peroxisome	37.82	21.3
CDX86742	Canola	cytosol	93.59	17.24
Zm00001d015256_P001	Maize	cytosol	44.87	16.91
AT4G11850.1	Thale cress	cytosol	90.38	16.43
AT4G11840.1	Thale cress	cytosol	90.38	16.28
AT4G11830.2	Thale cress	cytosol	87.18	15.89
KRG93706	Soybean	nucleus	29.49	15.81
CDX90808	Canola	cytosol	77.56	15.24
CDX90807	Canola	cytosol	76.92	14.87
CDY64184	Canola	mitochondrion	74.36	14.23
GSMUA_Achr8P12030_001	Banana	plastid	73.08	14.18
KRH77470	Soybean	cytosol	12.18	13.87
TraesCS1D01G189300.1	Wheat	cytosol	71.15	13.7
VIT_02s0025g04620.t01	Wine grape	cytosol	74.36	13.65
TraesCS1B01G195200.1	Wheat	cytosol	70.51	13.58
KXG40331	Sorghum	cytosol	71.15	13.44
Os03t0119100-01	Rice	plasma membrane	71.79	13.41
Solyc08g080130.2.1	Tomato	nucleus	71.79	13.24
PGSC0003DMT400058531	Potato	plastid	71.79	13.19
Zm00001d027386_P002	Maize	cytosol	70.51	13.19
TraesCS4D01G346700.1	Wheat	cytosol	69.23	13.0
HORVU4Hr1G085550.2	Barley	cytosol	69.23	13.0
TraesCS5A01G520900.1	Wheat	cytosol	69.23	13.0
GSMUA_Achr4P24890_001	Banana	cytosol, plastid	73.72	12.99
KRH77467	Soybean	nucleus	69.87	12.78
TraesCS1B01G382600.1	Wheat	mitochondrion	67.31	12.68
TraesCS1A01G365100.2	Wheat	mitochondrion	66.67	12.56
TraesCS1D01G370600.1	Wheat	cytosol	66.67	12.56
HORVU1Hr1G079150.1	Barley	cytosol	66.67	12.56
TraesCS4B01G352300.1	Wheat	cytosol	68.59	12.49
GSMUA_Achr5P20150_001	Banana	cytosol	72.44	11.33
CDX90066	Canola	cytosol	70.51	11.29
Zm00001d050470_P001	Maize	mitochondrion	28.21	11.06
CDY52961	Canola	cytosol, nucleus, peroxisome	69.87	10.99
Os10t0524400-01	Rice	plasma membrane	73.08	10.9
CDY54926	Canola	cytosol, nucleus, peroxisome	69.87	10.87
CDX88175	Canola	cytosol	51.28	10.8
EER92041	Sorghum	cytosol, nucleus, peroxisome	70.51	10.45
Zm00001d029684_P001	Maize	peroxisome	69.87	10.4
CDY15144	Canola	peroxisome	70.51	10.34
CDY35793	Canola	cytosol	57.05	10.29
CDX80505	Canola	cytosol	51.28	10.26
TraesCS1A01G187400.1	Wheat	peroxisome	71.79	10.12
HORVU1Hr1G048970.1	Barley	cytosol, nucleus, peroxisome	71.15	10.01
CDY05351	Canola	cytosol	51.92	9.94
CDY05490	Canola	cytosol	50.64	9.69
CDX72557	Canola	cytosol	53.21	9.6
CDY47037	Canola	cytosol	53.85	9.49
CDY67335	Canola	cytosol	51.92	9.35
CDY41630	Canola	cytosol	51.92	9.34
CDY60551	Canola	cytosol	46.79	8.99
CDY30108	Canola	cytosol	46.15	8.89
CDX97705	Canola	cytosol	46.15	8.89
CDY47540	Canola	cytosol	46.15	8.87
CDY21865	Canola	cytosol	43.59	8.37
CDY33065	Canola	cytosol	39.1	8.05
CDY24051	Canola	cytosol	39.1	8.05
CDX80734	Canola	cytosol	5.77	7.44
CDY20149	Canola	cytosol, nucleus, peroxisome	4.49	3.29
CDY70643	Canola	cytosol, peroxisome	4.49	3.29
CDY18811	Canola	cytosol, nucleus, peroxisome	21.79	3.25
CDX92096	Canola	nucleus	22.44	3.23
CDX95904	Canola	cytosol, nucleus, peroxisome	22.44	3.22
CDY42882	Canola	nucleus	6.41	3.11
CDY46254	Canola	cytosol	1.28	2.06
CDY20148	Canola	cytosol, peroxisome, plastid	3.21	1.25
CDY13284	Canola	cytosol	2.56	0.87
CDX87920	Canola	cytosol	0.0	0.0
CDY51604	Canola	cytosol	0.0	0.0
CDY63527	Canola	cytosol	0.0	0.0
KRH77469	Soybean	nucleus	0.0	0.0

Protein Annotations

EnsemblPlants:CDY41006	EnsemblPlantsGene:GSBRNA2T00072293001	Gene3D:3.30.870.10	InterPro:PLipase_D_fam	KEGG:00564+3.1.4.4	KEGG:00565+3.1.4.4
MetaCyc:PWY-3561	MetaCyc:PWY-7039	PANTHER:PTHR18896	PANTHER:PTHR18896:SF65	ProteinID:CDY41006	ProteinID:CDY41006.1
SUPFAM:SSF56024	UniParc:UPI0004EEE6FA	UniProt:A0A078HTG7	MapMan:35.1	:	:

Description

BnaA02g27960DBnaA02g27960D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HTG7]

Coordinates

chrLK032487:+:267944..268756

Molecular Weight (calculated)

17842.0 Da

IEP (calculated)

10.060

GRAVY (calculated)

-0.101

Length

156 amino acids

Sequence
(BLAST)

001: MRMIQRLGML SSVKGFPKDP KEASGRNLLC GKNILINMSI HAAYVKAIRS AQHFIYIVNQ YFLGSSFNWD SNKDLGANNL IPIEMALKIA NKIRAREKFA
101: AYIVIPMWPE GAPTSNPIQR ILYWQHKTMQ MVYQTIHKAL VEVGLDGQYE PQDFII

Best Arabidopsis Sequence Match ( AT4G11830.1 )
(BLAST)

001: MSMGGGSNHE FGQWLDQQLV PLATSSGSLM VELLHGRRIR KVDGEKSSKF TSDPYVTVSI SGAVIGRTFV ISNSENPVWM QHFDVPVAHS AAEVHFVVKD
101: NDPIGSKIIG VVGIPTKQLC SGNRIEGLFP ILNSSGKPCR KGAMLSLSIQ YTPMERMRLY QKGVGSGVEC VGVPGTYFPL RKGGRVTLYQ DAHVDDGTLP
201: SVHLDGGIQY RHGKCWEDMA DAIRRARRLI YITGWSVFHP VRLVRRNNDP TEGTLGELLK VKSQEGVRVL VLVWDDPTSM SFPGFSTKGL MNTSDEETRR
301: FFKHSSVQVL LCPRYGGKGH SFIKKSEVET IYTHHQKTMI VDAEAAQNRR KIVAFVGGLD LCNGRFDTPK HSLFGTLKTL HKDDFHNPNF VTTEDVGPRE
401: PWHDLHSKID GPAAYDVLAN FEERWMASKP RGIGKGRTSF DDSLLRINRI PDIMGLSEAS SANDNDPESW HVQVFRSIDS TSVKGFPKDP EEATGRNLLC
501: GKNILIDMSI HAAYVKAIRS AQHFIYIENQ YFLGSSFNWD SNKDLGANNL IPMEIALKIA NKIRARENFA AYIVIPMWPE GAPTSKPIQR ILYWQHKTMQ
601: MMYQTIYKAL LEVGLDGQLE PQDFLNFFCL GNREVGTREV PDGTVNVYNC PRKPPQPNAA QVQALKSRRF MIYVHSKGMV VDDEFVLIGS ANINQRSLEG
701: TRDTEIAMGG YQPHHSWAKK GSRPRGQIFG YRMSLWAEHL GFLEQEFEEP ENMECVRRVR QLSELNWGQY AAEEVTEMSG HLLKYPVQVD KTGKVSSLPG
801: CETFPDLGGK IIGSFLTLQE NLTI

Arabidopsis Description

PLDGAMMA2Phospholipase D gamma 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9T051]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.