CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 2
vacuole 1
plastid 1
cytosol 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER91265
OQU91413

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G11850.1	EER91265	AT4G26630.1	25387881
AT4G11850.1	OQU91413	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d029684_P001	Maize	peroxisome	95.35	95.8
TraesCS1B01G195200.1	Wheat	cytosol	68.38	88.89
TraesCS1D01G189300.1	Wheat	cytosol	68.19	88.64
Os10t0524400-01	Rice	plasma membrane	81.58	82.12
TraesCS1D01G370600.1	Wheat	cytosol	63.91	81.28
TraesCS1A01G365100.2	Wheat	mitochondrion	63.91	81.28
HORVU1Hr1G079150.1	Barley	cytosol	63.53	80.8
TraesCS1B01G382600.1	Wheat	mitochondrion	63.25	80.43
KXG40331	Sorghum	cytosol	59.64	76.03
HORVU1Hr1G048970.1	Barley	cytosol, nucleus, peroxisome	79.87	75.83
PGSC0003DMT400000378	Potato	cytosol	18.8	75.57
TraesCS1A01G187400.1	Wheat	peroxisome	79.39	75.52
PGSC0003DMT400026602	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	21.65	74.51
GSMUA_Achr8P12030_001	Banana	plastid	56.6	74.13
CDY41006	Canola	mitochondrion	10.45	70.51
KRG89825	Soybean	cytoskeleton, cytosol, peroxisome	19.28	69.76
CDY13283	Canola	mitochondrion	23.36	69.69
PGSC0003DMT400058531	Potato	plastid	55.18	68.43
Solyc08g080130.2.1	Tomato	nucleus	54.7	68.09
CDY28756	Canola	cytosol, extracellular	8.07	67.46
Bra022740.1-P	Field mustard	cytosol, extracellular	8.07	67.46
GSMUA_Achr5P20150_001	Banana	cytosol	63.82	67.4
Bra000752.1-P	Field mustard	cytosol, nucleus, peroxisome	33.62	67.3
VIT_02s0025g04620.t01	Wine grape	cytosol	54.04	66.94
CDX86742	Canola	cytosol	52.71	65.53
Bra014871.1-P	Field mustard	cytosol	52.61	65.41
KRH77467	Soybean	nucleus	52.61	64.95
Solyc01g091910.2.1	Tomato	plastid	54.99	64.69
AT4G11850.1	Thale cress	cytosol	52.61	64.57
AT4G00240.1	Thale cress	cytosol	56.79	64.51
CDX90066	Canola	cytosol	59.26	64.07
CDX90807	Canola	cytosol	48.72	63.57
CDY64184	Canola	mitochondrion	48.91	63.19
AT4G11840.1	Thale cress	cytosol	51.76	62.93
AT4G11830.2	Thale cress	cytosol	51.0	62.73
KRH65182	Soybean	cytosol	44.44	61.66
CDY52961	Canola	cytosol, nucleus, peroxisome	57.74	61.29
CDX90808	Canola	cytosol	45.87	60.83
CDY54926	Canola	cytosol, nucleus, peroxisome	57.93	60.82
Bra000753.1-P	Field mustard	cytosol	45.68	60.58
CDY15144	Canola	peroxisome	60.78	60.15
Bra033225.1-P	Field mustard	cytosol	60.97	60.0
KRH48290	Soybean	nucleus	59.35	59.69
CDY13284	Canola	cytosol	25.83	59.26
VIT_15s0048g01160.t01	Wine grape	cytosol	60.87	58.97
KRG93706	Soybean	nucleus	16.24	58.76
KRH77470	Soybean	cytosol	7.6	58.39
KRH01625	Soybean	cytosol	60.68	58.25
KRH70487	Soybean	cytosol	60.02	57.14
KRH77469	Soybean	nucleus	3.8	57.14
AT2G42010.2	Thale cress	peroxisome	60.11	57.13
CDY46254	Canola	cytosol	5.03	54.64
Solyc10g017650.1.1	Tomato	cytosol	57.17	53.8
KXG36094	Sorghum	cytosol	43.11	52.85
EER98315	Sorghum	cytosol	41.5	52.09
EER88618	Sorghum	cytosol	35.14	45.34
KXG31749	Sorghum	cytosol	34.57	44.83
EES17463	Sorghum	cytosol	34.57	44.77
OQU77524	Sorghum	plastid	34.57	44.34
OQU84227	Sorghum	cytosol	37.99	43.53
EES10287	Sorghum	cytosol	33.71	42.36
Bra008515.1-P	Field mustard	mitochondrion, plastid	58.21	42.28
KXG39222	Sorghum	cytosol, peroxisome, vacuole	32.76	40.83
EER98913	Sorghum	cytosol	31.24	39.78
OQU77834	Sorghum	endoplasmic reticulum, golgi	13.96	21.34
KXG32384	Sorghum	cytosol, nucleus, peroxisome	19.18	18.02
OQU77836	Sorghum	cytosol	5.7	12.53

Protein Annotations

KEGG:00564+3.1.4.4	KEGG:00565+3.1.4.4	Gene3D:2.60.40.150	Gene3D:3.30.870.10	MapMan:5.7.2.4.2	EntrezGene:8062892
InterPro:C2_dom	InterPro:C2_domain_sf	UniProt:C5WUK8	EnsemblPlants:EER92041	ProteinID:EER92041	ProteinID:EER92041.1
GO:GO:0003674	GO:GO:0003824	InterPro:IPR000008	InterPro:IPR001736	InterPro:IPR035892	PFAM:PF00168
PFAM:PF00614	PFAM:PF12357	PFAM:PF13091	InterPro:PLD-like_dom	InterPro:PLipase_D/transphosphatidylase	InterPro:PLipase_D_C
InterPro:PLipase_D_fam	PRINTS:PR01217	PFscan:PS50004	PFscan:PS50035	PANTHER:PTHR18896	PANTHER:PTHR18896:SF65
MetaCyc:PWY-3561	MetaCyc:PWY-7039	SMART:SM00155	SMART:SM00239	EnsemblPlantsGene:SORBI_3001G320200	SUPFAM:SSF49562
SUPFAM:SSF56024	unigene:Sbi.3688	UniParc:UPI0001A81F0C	RefSeq:XP_002465043.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr1:+:60794852..60801560

Molecular Weight (calculated)

116961.0 Da

IEP (calculated)

7.180

GRAVY (calculated)

-0.463

Length

1053 amino acids

Sequence
(BLAST)

0001: MENGNNGGHP PPHYPPYQYP YPQPQAQAQL YPYGYQYPPA PPPPSSAAPA APYLSPSPSF PSYAPAPPPP QQQQYHSGPL QAYPPTPQYH AYPPPPHPSP
0101: YGHGYNPYPS PYSSSYPSTN PSPSPSPGLS PSSSFHHQHA SAAPEPPSPA PSAPSYPIED VLATMRLSDR HDYASSPSVS APPPSTPFSG DGSSHGGGMQ
0201: VVPYGAAAGG SQHGGGMQMV PYGAAAGGSQ HGGSFRASLK VVLLHGSLDI WVHDARHLPN KDMFSKSVAE FLGPRITSAV GSKMSSANMT SDPYVTVQVS
0301: YATVARTYVI PNCENPVWSQ NFLVPVGHEA AEVEFVVKDS DVFGAQIIGV VSIPAEKLLT GARIQGVYPV LEPNGKPCAP GAVLHLSIQY IPVAQLTMYH
0401: HGVVAGPDSI GVPHTYFPLR RGMRVTLYQD AHVPDGCLPD IWLDNGLRYQ HGQCWRDIYD AICQARKLIY IVGWSVFHTI HLVRDGTQAP SLGDLLKMKS
0501: QEGVRVLLLV WDDPTSRSIL GYKLDGFMGT RDEETRRFFK HSSVQVLLCP RSAGKRHSWV KQQETGTIFT HHQKTVIVDA DAGNYRRKIV AFVGGLDLCG
0601: GRYDTPWHPL FRTLQNEHKE DYYNPNFNTV DARGPREPWH DLHSKIDGPA AYDVLQNFQE RWLKAAKRHG IKKLAKSYDD ALLSIERIPD IININDAIYF
0701: SDNDPETWHV QVFRSIDSNS AKGFPKDPRA ATMKNLVCGK NVLIDMSIHT AYVHAIRAAQ HYIYIENQYF IGSSFNWDSN KDLGANNLIP IEIALKIANK
0801: IKANERFSAY IVVPMWPEGN PTGAATQRIL YWQNKTMQMM YETIYRALKE VGLDDMYEPQ DYLNFFCLGN REVDDSTSNS NASNTANNPQ EHARKNRRFM
0901: VYVHSKGMIV DDEYVIVGSA NINQRSMEGI RDTEIAMGAY QPQYTWANKL SAPRGQIYGY RMSLWAEHIG SIEEDFHYPE SLECMRRVRH LGEENWKQFV
1001: ADEVTEMRGH LMKYPVSVDR KGKVKPLPGC TTFPDLGGNI CGSFTAIQEN LTI

Best Arabidopsis Sequence Match ( AT2G42010.1 )
(BLAST)

0001: MDNHGPRYPY PYGQYPYPYP YPAPYRPPSS EPYPPPPTNQ YSAPYYPYPP PPYATPPPYA SPPPPHQHTS GSHSGPLDYS HNPQPSSLAA APPEYHRHSF
0101: DYQPSPYPYQ PQGNFGAYGP PPPHYSYQEP AQYPPPETKP QEPLPPPQQT QGFQEYRRQD CLSTGGTGHD NVSNSGSSYP PVDELLGGLH ISTNQPGPSV
0201: PQLSSLPSNS WQSRPGDLYG YPNSSFPSNS HLPQLGRVDS SSSYYASTES PHSADMQMTL FGKGSLKVLL LHGNLDIWIY HAKNLPNMDM FHKTLGDMFG
0301: RLPGKIEGQL TSKITSDPYV SVSVAGAVIG RTYVMSNSEN PVWMQHFYVP VAHHAAEVHF VVKDSDVVGS QLIGLVTIPV EQIYSGAKIE GTYPILNSNG
0401: KPCKPGANLS LSIQYTPMDK LSVYHHGVGA GPDYQGVPGT YFPLRKGGTV RLYQDAHVPE GMLPGIRLDN GMSYEHGKCW HDMFDAIRQA RRLIYITGWS
0501: VWHKVKLIRD KLGPASECTL GELLRSKSQE GVRVLLLIWD DPTSRSILGY KTDGVMATHD EETRRFFKHS SVQVLLCPRN AGKRHSWVKQ REVGTIYTHH
0601: QKNVIVDADA GGNRRKIIAF VGGLDLCDGR YDTPQHPLFR TLQTIHKDDF HNPTFTGNLS GCPREPWHDL HSKIDGPAAY DVLTNFEERW LKAAKPSGIK
0701: KFKTSYDDAL LRIDRIPDIL GVSDTPTVSE NDPEAWHVQI FRSIDSNSVK GFPKDPKDAT CKNLVCGKNV LIDMSIHTAY VKAIRAAQHF IYIENQYFIG
0801: SSYNWNAHKD IGANNLIPME IALKIAEKIR ANERFAAYIV IPMWPEGVPT GAATQRILYW QHKTIQMMYE TIYKALVETG LEGAFSPQDY LNFFCLGNRE
0901: MVDGIDNSGT GSPSNANTPQ ALSRKSRRFM VYVHSKGMVV DDEYVVIGSA NINQRSMEGT RDTEIAMGAY QPQHTWARKH SGPRGQIYGY RMSLWAEHMA
1001: TLDDCFTQPE SIECVRKVRT MGERNWKQFA AEEVSDMRGH LLKYPVEVDR KGKVRPLPGS ETFPDVGGNI VGSFIAIQEN LTI

Arabidopsis Description

PLDBETA1phospholipase D beta 1 [Source:TAIR;Acc:AT2G42010]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.