Factsheet for Bra022740.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

plastid 2
vacuole 2
mitochondrion 3
cytosol 2
extracellular 2
endoplasmic reticulum 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
EpiLoc:	vacuole
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	plastid
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra010432.1-P
Bra026415.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G11850.1	Bra010432.1-P	AT4G26630.1	25387881
AT4G11850.1	Bra026415.1-P	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY28756	Canola	cytosol, extracellular	100.0	100.0
Zm00001d015818_P002	Maize	cytosol, nucleus, peroxisome	47.62	21.66
Bra000752.1-P	Field mustard	cytosol, nucleus, peroxisome	75.4	18.06
KRH77470	Soybean	cytosol	15.87	14.6
Bra014871.1-P	Field mustard	cytosol	85.71	12.75
Zm00001d015256_P001	Maize	cytosol	40.48	12.32
AT4G11840.1	Thale cress	cytosol	84.13	12.24
AT4G11850.1	Thale cress	cytosol	83.33	12.24
AT4G11830.2	Thale cress	cytosol	81.75	12.03
Bra000753.1-P	Field mustard	cytosol	74.6	11.84
GSMUA_Achr8P12030_001	Banana	plastid	69.84	10.95
TraesCS1D01G189300.1	Wheat	cytosol	68.25	10.62
Os03t0119100-01	Rice	plasma membrane	69.84	10.54
Solyc08g080130.2.1	Tomato	nucleus	70.63	10.52
TraesCS1B01G195200.1	Wheat	cytosol	67.46	10.49
PGSC0003DMT400058531	Potato	plastid	70.63	10.48
VIT_02s0025g04620.t01	Wine grape	cytosol	70.63	10.47
KXG40331	Sorghum	cytosol	68.25	10.41
Zm00001d027386_P002	Maize	cytosol	68.25	10.31
HORVU4Hr1G085550.2	Barley	cytosol	67.46	10.23
TraesCS5A01G520900.1	Wheat	cytosol	66.67	10.11
GSMUA_Achr4P24890_001	Banana	cytosol, plastid	70.63	10.06
TraesCS4D01G346700.1	Wheat	cytosol	65.87	9.99
KRH77467	Soybean	nucleus	67.46	9.96
TraesCS1A01G365100.2	Wheat	mitochondrion	64.29	9.78
TraesCS1B01G382600.1	Wheat	mitochondrion	64.29	9.78
TraesCS1D01G370600.1	Wheat	cytosol	64.29	9.78
HORVU1Hr1G079150.1	Barley	cytosol	64.29	9.78
TraesCS4B01G352300.1	Wheat	cytosol	65.87	9.68
GSMUA_Achr5P20150_001	Banana	cytosol	69.05	8.73
Bra034939.1-P	Field mustard	cytosol	57.14	8.64
KRG93706	Soybean	nucleus	19.84	8.59
Bra010512.1-P	Field mustard	cytosol	53.97	8.43
Os10t0524400-01	Rice	plasma membrane	69.84	8.41
Bra017730.1-P	Field mustard	cytosol	54.76	8.22
Bra033225.1-P	Field mustard	cytosol	69.05	8.13
EER92041	Sorghum	cytosol, nucleus, peroxisome	67.46	8.07
Bra037982.1-P	Field mustard	cytosol	48.41	8.02
Zm00001d029684_P001	Maize	peroxisome	66.67	8.02
TraesCS1A01G187400.1	Wheat	peroxisome	69.05	7.86
HORVU1Hr1G048970.1	Barley	cytosol, nucleus, peroxisome	68.25	7.75
Bra030375.1-P	Field mustard	cytosol	49.21	7.64
Bra020497.1-P	Field mustard	cytosol	49.21	7.54
Zm00001d050470_P001	Maize	mitochondrion	23.81	7.54
Bra040960.1-P	Field mustard	cytosol	48.41	7.51
Bra027209.1-P	Field mustard	cytosol	47.62	7.41
Bra021132.1-P	Field mustard	cytosol	45.24	7.02
Bra009836.1-P	Field mustard	cytosol	50.79	6.87
Bra008515.1-P	Field mustard	mitochondrion, plastid	67.46	5.86
Bra022178.1-P	Field mustard	cytosol, nucleus, peroxisome	26.19	3.08
Bra040531.1-P	Field mustard	cytosol, nucleus, peroxisome	24.6	2.96
KRH77469	Soybean	nucleus	0.0	0.0

Protein Annotations

EnsemblPlants:Bra022740.1	EnsemblPlants:Bra022740.1-P	EnsemblPlantsGene:Bra022740	Gene3D:3.30.870.10	InterPro:PLipase_D_fam	KEGG:00564+3.1.4.4
KEGG:00565+3.1.4.4	PANTHER:PTHR18896	PANTHER:PTHR18896:SF65	SUPFAM:SSF56024	UniParc:UPI0002546684	UniProt:M4E1U0
MapMan:35.1	:	:	:	:	:

Description

AT4G11840 (E=1e-052) PLDGAMMA3 | PLDGAMMA3; phospholipase D

Coordinates

chrA02:-:7682535..7683053

Molecular Weight (calculated)

14195.6 Da

IEP (calculated)

9.995

GRAVY (calculated)

0.187

Length

126 amino acids

Sequence
(BLAST)

001: MSIHAAYVKA IRSAQHFIYI VNQYFLGSSI IQLGFKQGLG SFGIAGANNL IPIEIALKIA NKIRARGKFA AYIVIPMWPE GAPTSNPIQR ILYWQHKTMQ
101: MMYQTIHKAL VEVGLDGQYE PQDFII

Best Arabidopsis Sequence Match ( AT4G11830.1 )
(BLAST)

001: MSMGGGSNHE FGQWLDQQLV PLATSSGSLM VELLHGRRIR KVDGEKSSKF TSDPYVTVSI SGAVIGRTFV ISNSENPVWM QHFDVPVAHS AAEVHFVVKD
101: NDPIGSKIIG VVGIPTKQLC SGNRIEGLFP ILNSSGKPCR KGAMLSLSIQ YTPMERMRLY QKGVGSGVEC VGVPGTYFPL RKGGRVTLYQ DAHVDDGTLP
201: SVHLDGGIQY RHGKCWEDMA DAIRRARRLI YITGWSVFHP VRLVRRNNDP TEGTLGELLK VKSQEGVRVL VLVWDDPTSM SFPGFSTKGL MNTSDEETRR
301: FFKHSSVQVL LCPRYGGKGH SFIKKSEVET IYTHHQKTMI VDAEAAQNRR KIVAFVGGLD LCNGRFDTPK HSLFGTLKTL HKDDFHNPNF VTTEDVGPRE
401: PWHDLHSKID GPAAYDVLAN FEERWMASKP RGIGKGRTSF DDSLLRINRI PDIMGLSEAS SANDNDPESW HVQVFRSIDS TSVKGFPKDP EEATGRNLLC
501: GKNILIDMSI HAAYVKAIRS AQHFIYIENQ YFLGSSFNWD SNKDLGANNL IPMEIALKIA NKIRARENFA AYIVIPMWPE GAPTSKPIQR ILYWQHKTMQ
601: MMYQTIYKAL LEVGLDGQLE PQDFLNFFCL GNREVGTREV PDGTVNVYNC PRKPPQPNAA QVQALKSRRF MIYVHSKGMV VDDEFVLIGS ANINQRSLEG
701: TRDTEIAMGG YQPHHSWAKK GSRPRGQIFG YRMSLWAEHL GFLEQEFEEP ENMECVRRVR QLSELNWGQY AAEEVTEMSG HLLKYPVQVD KTGKVSSLPG
801: CETFPDLGGK IIGSFLTLQE NLTI

Arabidopsis Description

PLDGAMMA2Phospholipase D gamma 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9T051]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.