Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- peroxisome 1
- mitochondrion 1
- nucleus 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d013757_P010 | |
| Zm00001d033159_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G11850.1 | Zm00001d013757_P010 | AT4G26630.1 | 25387881 |
| AT4G11850.1 | Zm00001d033159_P001 | AT4G26630.1 | 25387881 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400000378 | Potato | cytosol | 48.38 | 51.15 |
| CDY28756 | Canola | cytosol, extracellular | 21.66 | 47.62 |
| Bra022740.1-P | Field mustard | cytosol, extracellular | 21.66 | 47.62 |
| PGSC0003DMT400026602 | Potato | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole | 49.46 | 44.77 |
| KRG89825 | Soybean | cytoskeleton, cytosol, peroxisome | 41.88 | 39.86 |
| CDY13283 | Canola | mitochondrion | 49.1 | 38.53 |
| CDY41006 | Canola | mitochondrion | 21.3 | 37.82 |
| Zm00001d006262_P001 | Maize | cytoskeleton, cytosol, peroxisome | 19.13 | 34.42 |
| Zm00001d015256_P001 | Maize | cytosol | 48.38 | 32.37 |
| KRH77470 | Soybean | cytosol | 15.88 | 32.12 |
| Bra000752.1-P | Field mustard | cytosol, nucleus, peroxisome | 50.9 | 26.81 |
| Zm00001d027386_P002 | Maize | cytosol | 68.95 | 22.9 |
| Zm00001d023573_P002 | Maize | plastid | 29.6 | 22.65 |
| Os03t0119100-01 | Rice | plasma membrane | 64.62 | 21.44 |
| HORVU4Hr1G085550.2 | Barley | cytosol | 62.45 | 20.82 |
| TraesCS4D01G346700.1 | Wheat | cytosol | 60.65 | 20.22 |
| GSMUA_Achr8P12030_001 | Banana | plastid | 58.48 | 20.15 |
| TraesCS5A01G520900.1 | Wheat | cytosol | 60.29 | 20.1 |
| TraesCS4B01G352300.1 | Wheat | cytosol | 60.65 | 19.6 |
| Solyc08g080130.2.1 | Tomato | nucleus | 58.84 | 19.27 |
| KRH77467 | Soybean | nucleus | 58.48 | 18.99 |
| PGSC0003DMT400058531 | Potato | plastid | 57.76 | 18.85 |
| CDX90808 | Canola | cytosol | 53.79 | 18.77 |
| Bra000753.1-P | Field mustard | cytosol | 53.79 | 18.77 |
| VIT_02s0025g04620.t01 | Wine grape | cytosol | 57.4 | 18.71 |
| CDX90807 | Canola | cytosol | 54.15 | 18.59 |
| CDX86742 | Canola | cytosol | 55.23 | 18.06 |
| CDY64184 | Canola | mitochondrion | 53.07 | 18.04 |
| Bra014871.1-P | Field mustard | cytosol | 54.87 | 17.95 |
| KRH65182 | Soybean | cytosol | 48.74 | 17.79 |
| AT4G11830.2 | Thale cress | cytosol | 54.87 | 17.76 |
| AT4G11840.1 | Thale cress | cytosol | 55.23 | 17.67 |
| AT4G11850.1 | Thale cress | cytosol | 54.15 | 17.48 |
| Solyc01g091910.2.1 | Tomato | plastid | 55.6 | 17.21 |
| AT4G00240.1 | Thale cress | cytosol | 55.96 | 16.72 |
| GSMUA_Achr5P20150_001 | Banana | cytosol | 59.57 | 16.55 |
| CDX90066 | Canola | cytosol | 57.76 | 16.43 |
| Zm00001d029684_P001 | Maize | peroxisome | 62.09 | 16.41 |
| Zm00001d005484_P003 | Maize | cytosol | 49.82 | 15.88 |
| CDY52961 | Canola | cytosol, nucleus, peroxisome | 55.96 | 15.62 |
| KRH48290 | Soybean | nucleus | 58.48 | 15.47 |
| CDY54926 | Canola | cytosol, nucleus, peroxisome | 55.96 | 15.45 |
| Zm00001d006257_P009 | Maize | cytosol | 47.65 | 15.42 |
| CDY15144 | Canola | peroxisome | 57.76 | 15.04 |
| Zm00001d022594_P002 | Maize | cytosol | 48.01 | 15.03 |
| VIT_15s0048g01160.t01 | Wine grape | cytosol | 58.84 | 15.0 |
| Bra033225.1-P | Field mustard | cytosol | 57.76 | 14.95 |
| Zm00001d005770_P001 | Maize | cytosol | 40.79 | 14.93 |
| Zm00001d039670_P004 | Maize | cytosol | 43.68 | 14.9 |
| Zm00001d046508_P001 | Maize | cytosol, mitochondrion, plasma membrane | 43.68 | 14.83 |
| Zm00001d008727_P002 | Maize | cytosol | 43.32 | 14.78 |
| AT2G42010.2 | Thale cress | peroxisome | 58.12 | 14.53 |
| Zm00001d015033_P001 | Maize | extracellular, plastid, vacuole | 47.29 | 14.07 |
| KRH01625 | Soybean | cytosol | 54.15 | 13.67 |
| Solyc10g017650.1.1 | Tomato | cytosol | 55.23 | 13.67 |
| KRH70487 | Soybean | cytosol | 54.51 | 13.65 |
| Zm00001d029397_P001 | Maize | cytosol, mitochondrion, peroxisome | 41.52 | 13.42 |
| Zm00001d037643_P001 | Maize | cytosol | 43.68 | 13.36 |
| CDY46254 | Canola | cytosol | 4.33 | 12.37 |
| Bra008515.1-P | Field mustard | mitochondrion, plastid | 55.96 | 10.69 |
| KRH77469 | Soybean | nucleus | 2.17 | 8.57 |
| Zm00001d009075_P001 | Maize | cytosol, nucleus, peroxisome | 20.58 | 6.01 |
| Zm00001d037946_P001 | Maize | cytosol, mitochondrion, nucleus, peroxisome | 23.83 | 5.69 |
| KRG93706 | Soybean | nucleus | 5.05 | 4.81 |
| Zm00001d050470_P001 | Maize | mitochondrion | 6.5 | 4.52 |
| CDY13284 | Canola | cytosol | 5.42 | 3.27 |
Protein Annotations
| EnsemblPlants:Zm00001d015818_P002 | EnsemblPlants:Zm00001d015818_T002 | EnsemblPlantsGene:Zm00001d015818 | Gene3D:3.30.870.10 | GO:GO:0003674 | GO:GO:0003824 |
| InterPro:IPR001736 | InterPro:PLipase_D/transphosphatidylase | InterPro:PLipase_D_fam | KEGG:00564+3.1.4.4 | KEGG:00565+3.1.4.4 | PANTHER:PTHR18896 |
| PANTHER:PTHR18896:SF61 | PFAM:PF00614 | PFscan:PS50035 | ProteinID:AQK69588.1 | SEG:seg | SMART:SM00155 |
| SUPFAM:SSF56024 | UniParc:UPI00084419D9 | UniProt:A0A1D6H435 | MapMan:50.3.1 | : | : |
Description
Phospholipase D gamma 1
Coordinates
chr5:+:123624245..123628677
Molecular Weight (calculated)
31707.6 Da
IEP (calculated)
6.652
GRAVY (calculated)
-0.477
Length
277 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGRADGHGR GRREGEGIGW EDRKWGDGDR IRKISYECEV QYIASANNLI PIEIALKIAN KIYSNERFSA YIVVPMWPEG NPTGTLTQRI LYWQKMTMQM
101: MYEIIYKALK EVGLDGTYEP QDYLNFFCLG NREAEDTTCT SSGPFSASNP QDQARKNRRF MVYVHSKGMI VDDEYVIIGS ANINQRSMEG TRDTEIAMAA
201: YQPQHTWANM LSAPRGQVIC LSSDNCDKLV TCNCRSATLF CISYFLWQND KNRSSYHNLN CVISLPTFQE HLGDFFR
101: MYEIIYKALK EVGLDGTYEP QDYLNFFCLG NREAEDTTCT SSGPFSASNP QDQARKNRRF MVYVHSKGMI VDDEYVIIGS ANINQRSMEG TRDTEIAMAA
201: YQPQHTWANM LSAPRGQVIC LSSDNCDKLV TCNCRSATLF CISYFLWQND KNRSSYHNLN CVISLPTFQE HLGDFFR
0001: MDNHGPRYPY PYGQYPYPYP YPAPYRPPSS EPYPPPPTNQ YSAPYYPYPP PPYATPPPYA SPPPPHQHTS GSHSGPLDYS HNPQPSSLAA APPEYHRHSF
0101: DYQPSPYPYQ PQGNFGAYGP PPPHYSYQEP AQYPPPETKP QEPLPPPQQT QGFQEYRRQD CLSTGGTGHD NVSNSGSSYP PVDELLGGLH ISTNQPGPSV
0201: PQLSSLPSNS WQSRPGDLYG YPNSSFPSNS HLPQLGRVDS SSSYYASTES PHSADMQMTL FGKGSLKVLL LHGNLDIWIY HAKNLPNMDM FHKTLGDMFG
0301: RLPGKIEGQL TSKITSDPYV SVSVAGAVIG RTYVMSNSEN PVWMQHFYVP VAHHAAEVHF VVKDSDVVGS QLIGLVTIPV EQIYSGAKIE GTYPILNSNG
0401: KPCKPGANLS LSIQYTPMDK LSVYHHGVGA GPDYQGVPGT YFPLRKGGTV RLYQDAHVPE GMLPGIRLDN GMSYEHGKCW HDMFDAIRQA RRLIYITGWS
0501: VWHKVKLIRD KLGPASECTL GELLRSKSQE GVRVLLLIWD DPTSRSILGY KTDGVMATHD EETRRFFKHS SVQVLLCPRN AGKRHSWVKQ REVGTIYTHH
0601: QKNVIVDADA GGNRRKIIAF VGGLDLCDGR YDTPQHPLFR TLQTIHKDDF HNPTFTGNLS GCPREPWHDL HSKIDGPAAY DVLTNFEERW LKAAKPSGIK
0701: KFKTSYDDAL LRIDRIPDIL GVSDTPTVSE NDPEAWHVQI FRSIDSNSVK GFPKDPKDAT CKNLVCGKNV LIDMSIHTAY VKAIRAAQHF IYIENQYFIG
0801: SSYNWNAHKD IGANNLIPME IALKIAEKIR ANERFAAYIV IPMWPEGVPT GAATQRILYW QHKTIQMMYE TIYKALVETG LEGAFSPQDY LNFFCLGNRE
0901: MVDGIDNSGT GSPSNANTPQ ALSRKSRRFM VYVHSKGMVV DDEYVVIGSA NINQRSMEGT RDTEIAMGAY QPQHTWARKH SGPRGQIYGY RMSLWAEHMA
1001: TLDDCFTQPE SIECVRKVRT MGERNWKQFA AEEVSDMRGH LLKYPVEVDR KGKVRPLPGS ETFPDVGGNI VGSFIAIQEN LTI
0101: DYQPSPYPYQ PQGNFGAYGP PPPHYSYQEP AQYPPPETKP QEPLPPPQQT QGFQEYRRQD CLSTGGTGHD NVSNSGSSYP PVDELLGGLH ISTNQPGPSV
0201: PQLSSLPSNS WQSRPGDLYG YPNSSFPSNS HLPQLGRVDS SSSYYASTES PHSADMQMTL FGKGSLKVLL LHGNLDIWIY HAKNLPNMDM FHKTLGDMFG
0301: RLPGKIEGQL TSKITSDPYV SVSVAGAVIG RTYVMSNSEN PVWMQHFYVP VAHHAAEVHF VVKDSDVVGS QLIGLVTIPV EQIYSGAKIE GTYPILNSNG
0401: KPCKPGANLS LSIQYTPMDK LSVYHHGVGA GPDYQGVPGT YFPLRKGGTV RLYQDAHVPE GMLPGIRLDN GMSYEHGKCW HDMFDAIRQA RRLIYITGWS
0501: VWHKVKLIRD KLGPASECTL GELLRSKSQE GVRVLLLIWD DPTSRSILGY KTDGVMATHD EETRRFFKHS SVQVLLCPRN AGKRHSWVKQ REVGTIYTHH
0601: QKNVIVDADA GGNRRKIIAF VGGLDLCDGR YDTPQHPLFR TLQTIHKDDF HNPTFTGNLS GCPREPWHDL HSKIDGPAAY DVLTNFEERW LKAAKPSGIK
0701: KFKTSYDDAL LRIDRIPDIL GVSDTPTVSE NDPEAWHVQI FRSIDSNSVK GFPKDPKDAT CKNLVCGKNV LIDMSIHTAY VKAIRAAQHF IYIENQYFIG
0801: SSYNWNAHKD IGANNLIPME IALKIAEKIR ANERFAAYIV IPMWPEGVPT GAATQRILYW QHKTIQMMYE TIYKALVETG LEGAFSPQDY LNFFCLGNRE
0901: MVDGIDNSGT GSPSNANTPQ ALSRKSRRFM VYVHSKGMVV DDEYVVIGSA NINQRSMEGT RDTEIAMGAY QPQHTWARKH SGPRGQIYGY RMSLWAEHMA
1001: TLDDCFTQPE SIECVRKVRT MGERNWKQFA AEEVSDMRGH LLKYPVEVDR KGKVRPLPGS ETFPDVGGNI VGSFIAIQEN LTI
Arabidopsis Description
PLDBETA1phospholipase D beta 1 [Source:TAIR;Acc:AT2G42010]
SUBAcon: [peroxisome]
SUBAcon: [peroxisome]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.