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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • plastid 1
  • peroxisome 1
  • mitochondrion 1
  • cytosol 2
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus, peroxisome
BaCelLo:nucleus
iPSORT:plastid
MultiLoc:peroxisome
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX89318
CDX94304
CDX97358

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G11850.1 CDX89318 AT4G26630.1 25387881
AT4G11850.1 CDX94304 AT4G26630.1 25387881
AT4G11850.1 CDX97358 AT4G26630.1 25387881
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra014871.1-P Field mustard cytosol 95.21 51.59
CDX86742 Canola cytosol 95.21 51.59
AT4G11850.1 Thale cress cytosol 92.16 49.3
AT4G11840.1 Thale cress cytosol 88.02 46.65
AT4G11830.2 Thale cress cytosol 83.01 44.51
CDX90807 Canola cytosol 70.59 40.15
Zm00001d050470_P001 Maize mitochondrion 34.42 39.7
CDY64184 Canola mitochondrion 70.15 39.51
CDY63527 Canola cytosol 27.23 37.43
CDX87920 Canola cytosol 27.89 37.32
CDX80734 Canola cytosol 9.8 37.19
CDX90808 Canola cytosol 63.83 36.9
CDY20148 Canola cytosol, peroxisome, plastid 31.81 36.59
VIT_02s0025g04620.t01 Wine grape cytosol 64.49 34.82
Solyc08g080130.2.1 Tomato nucleus 64.05 34.75
KRH77467 Soybean nucleus 64.27 34.58
PGSC0003DMT400058531 Potato plastid 63.83 34.51
TraesCS1D01G189300.1 Wheat cytosol 60.13 34.07
TraesCS1B01G195200.1 Wheat cytosol 59.7 33.83
KRG93706 Soybean nucleus 20.91 32.99
TraesCS4D01G346700.1 Wheat cytosol 57.95 32.01
HORVU4Hr1G085550.2 Barley cytosol 57.3 31.65
KXG40331 Sorghum cytosol 56.86 31.6
TraesCS5A01G520900.1 Wheat cytosol 57.08 31.53
TraesCS1A01G365100.2 Wheat mitochondrion 56.86 31.52
Zm00001d027386_P002 Maize cytosol 57.08 31.41
TraesCS1B01G382600.1 Wheat mitochondrion 56.43 31.28
TraesCS1D01G370600.1 Wheat cytosol 56.21 31.16
Os03t0119100-01 Rice plasma membrane 56.64 31.14
CDX90066 Canola cytosol 66.01 31.11
GSMUA_Achr8P12030_001 Banana plastid 53.81 30.72
TraesCS4B01G352300.1 Wheat cytosol 57.08 30.57
HORVU1Hr1G079150.1 Barley cytosol 54.47 30.19
CDY52961 Canola cytosol, nucleus, peroxisome 62.31 28.83
GSMUA_Achr4P24890_001 Banana cytosol, plastid 55.12 28.59
CDY54926 Canola cytosol, nucleus, peroxisome 62.31 28.51
CDY15144 Canola peroxisome 66.01 28.48
GSMUA_Achr5P20150_001 Banana cytosol 59.91 27.58
Zm00001d029684_P001 Maize peroxisome 59.26 25.95
EER92041 Sorghum cytosol, nucleus, peroxisome 59.26 25.83
Os10t0524400-01 Rice plasma membrane 57.73 25.33
TraesCS1A01G187400.1 Wheat peroxisome 60.78 25.2
HORVU1Hr1G048970.1 Barley cytosol, nucleus, peroxisome 59.48 24.62
CDY67335 Canola cytosol 46.41 24.6
KRH77469 Soybean nucleus 3.7 24.29
CDY41630 Canola cytosol 45.75 24.22
CDX72557 Canola cytosol 45.32 24.05
CDY47037 Canola cytosol 45.53 23.62
CDY35793 Canola cytosol 44.01 23.35
CDY60551 Canola cytosol 38.13 21.55
CDY47540 Canola cytosol 38.13 21.55
CDX97705 Canola cytosol 37.91 21.48
CDY30108 Canola cytosol 37.91 21.48
CDY21865 Canola cytosol 37.25 21.06
CDY05490 Canola cytosol 33.77 19.02
CDX80505 Canola cytosol 32.03 18.85
CDY05351 Canola cytosol 33.33 18.77
CDX88175 Canola cytosol 29.63 18.35
CDY33065 Canola cytosol 28.1 17.02
CDY24051 Canola cytosol 27.89 16.89
CDY51545 Canola cytosol 4.79 15.38
Zm00001d015256_P001 Maize cytosol 11.11 12.32
CDY18811 Canola cytosol, nucleus, peroxisome 18.52 8.12
CDY42882 Canola nucleus 5.45 7.76
CDX92096 Canola nucleus 18.08 7.67
CDX95904 Canola cytosol, nucleus, peroxisome 18.08 7.63
CDY51604 Canola cytosol 3.7 6.03
Zm00001d015818_P002 Maize cytosol, nucleus, peroxisome 3.27 5.42
CDY41006 Canola mitochondrion 0.87 2.56
KRH77470 Soybean cytosol 0.65 2.19
CDY46254 Canola cytosol 0.44 2.06
CDY13283 Canola mitochondrion 1.31 1.7
CDY20149 Canola cytosol, nucleus, peroxisome 0.22 0.47
CDY28756 Canola cytosol, extracellular 0.0 0.0
CDY70643 Canola cytosol, peroxisome 0.0 0.0
Protein Annotations
KEGG:00564+3.1.4.4KEGG:00565+3.1.4.4Gene3D:2.60.40.150MapMan:50.3.1GO:A0A078FJZ8UniProt:A0A078FJZ8
InterPro:C2_domInterPro:C2_domain_sfEnsemblPlants:CDY13284ProteinID:CDY13284ProteinID:CDY13284.1GO:GO:0003674
GO:GO:0003824EnsemblPlantsGene:GSBRNA2T00071252001InterPro:IPR000008InterPro:IPR001736InterPro:IPR035892PFAM:PF00168
PFAM:PF00614InterPro:PLipase_D/transphosphatidylaseInterPro:PLipase_D_famPFscan:PS50004PFscan:PS50035PANTHER:PTHR18896
PANTHER:PTHR18896:SF84MetaCyc:PWY-3561MetaCyc:PWY-7039SMART:SM00239SUPFAM:SSF49562SUPFAM:SSF56024
UniParc:UPI0004EDEEF8:::::
Description
BnaC09g23720DBnaC09g23720D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FJZ8]
Coordinates
chrLK032033:-:679881..681658
Molecular Weight (calculated)
50660.4 Da
IEP (calculated)
9.236
GRAVY (calculated)
-0.351
Length
459 amino acids
Sequence
(BLAST)
001: MAHHPIYTET LSMGGGSSHG FGQQPVPFAT SSGSLRVELL HGNLDIWVKE AKHLPNMDGF HNRLGGMLSG LTRRNSSKDE KPSKITSDPY VTVSISGAVI
101: GRTFVISNSE NPVWMQHFDV PVAHSAAEVH FVVKDSDIIG SQIMGAVGIP TEQLSSGNRI EGFFPILNSS GKPCKQGAVL SLSVQYTPVE RMRLYQMGVG
201: FGNECVGVPG TYFPLRKGGR VTLYQDAHVD DGTLPSVYLD GGAQYRHGKC WEDMADAIRQ ARRLVYITGW SVYHPVRLVR RNNDPTDGTL GDLLKAKSQE
301: GVRVLVLVWD DPTSRSLLGF KTQGVMNTSD EETRRFFKHS SVQVLLCPRS GGKGHSFIKK SEVGTIYTHH QKTVIVDADA GQNRRKIVAF VGGLDVCNGR
401: FDTPKHPLFR TLKTLHKDDF HNPNFLTTAD DGPREPWHDL HSKIDGFKIS RIGEVKIGF
Best Arabidopsis Sequence Match ( AT4G11830.2 )
(BLAST)
001: MSMGGGSNHE FGQWLDQQLV PLATSSGSLM VELLHGNLDI WVKEAKHLPN MICYRNKLVG GISFSELGRR IRKVDGEKSS KFTSDPYVTV SISGAVIGRT
101: FVISNSENPV WMQHFDVPVA HSAAEVHFVV KDNDPIGSKI IGVVGIPTKQ LCSGNRIEGL FPILNSSGKP CRKGAMLSLS IQYTPMERMR LYQKGVGSGV
201: ECVGVPGTYF PLRKGGRVTL YQDAHVDDGT LPSVHLDGGI QYRHGKCWED MADAIRRARR LIYITGWSVF HPVRLVRRNN DPTEGTLGEL LKVKSQEGVR
301: VLVLVWDDPT SMSFPGFSTK GLMNTSDEET RRFFKHSSVQ VLLCPRYGGK GHSFIKKSEV ETIYTHHQKT MIVDAEAAQN RRKIVAFVGG LDLCNGRFDT
401: PKHSLFGTLK TLHKDDFHNP NFVTTEDVGP REPWHDLHSK IDGPAAYDVL ANFEERWMAS KPRGIGKGRT SFDDSLLRIN RIPDIMGLSE ASSANDNDPE
501: SWHVQVFRSI DSTSVKGFPK DPEEATGRNL LCGKNILIDM SIHAAYVKAI RSAQHFIYIE NQYFLGSSFN WDSNKDLGAN NLIPMEIALK IANKIRAREN
601: FAAYIVIPMW PEGAPTSKPI QRILYWQHKT MQMMYQTIYK ALLEVGLDGQ LEPQDFLNFF CLGNREVGTR EVPDGTVNVY NCPRKPPQPN AAQVQALKSR
701: RFMIYVHSKG MVVDDEFVLI GSANINQRSL EGTRDTEIAM GGYQPHHSWA KKGSRPRGQI FGYRMSLWAE HLGFLEQEFE EPENMECVRR VRQLSELNWG
801: QYAAEEVTEM SGHLLKYPVQ VDKTGKVSSL PGCETFPDLG GKIIGSFLTL QENLTI
Arabidopsis Description
PLDGAMMA2Phospholipase D gamma 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9T051]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.