CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY28756	Canola	cytosol, extracellular	44.06	50.0
CDY41006	Canola	mitochondrion	43.36	39.74
CDY13283	Canola	mitochondrion	58.74	23.8
CDX90808	Canola	cytosol	86.71	15.62
CDX90807	Canola	cytosol	79.02	14.0
CDY64184	Canola	mitochondrion	76.92	13.5
CDX80734	Canola	cytosol	11.19	13.22
CDX86742	Canola	cytosol	74.13	12.51
CDX90066	Canola	cytosol	65.03	9.55
CDY52961	Canola	cytosol, nucleus, peroxisome	63.64	9.17
CDY54926	Canola	cytosol, nucleus, peroxisome	63.64	9.07
CDX88175	Canola	cytosol	46.85	9.04
CDY20149	Canola	cytosol, nucleus, peroxisome	13.29	8.92
CDY70643	Canola	cytosol, peroxisome	13.29	8.92
CDY67335	Canola	cytosol	53.85	8.89
CDY41630	Canola	cytosol	53.15	8.77
CDY15144	Canola	peroxisome	65.03	8.74
CDY35793	Canola	cytosol	52.45	8.67
CDX72557	Canola	cytosol	51.75	8.55
CDY47037	Canola	cytosol	52.45	8.47
CDX80505	Canola	cytosol	46.15	8.46
CDY24051	Canola	cytosol	44.76	8.44
CDY33065	Canola	cytosol	44.06	8.31
CDY60551	Canola	cytosol	46.85	8.25
CDY30108	Canola	cytosol	46.15	8.15
CDX97705	Canola	cytosol	46.15	8.15
CDY47540	Canola	cytosol	46.15	8.13
CDY05351	Canola	cytosol	45.45	7.98
CDY05490	Canola	cytosol	44.76	7.85
CDY21865	Canola	cytosol	40.56	7.14
CDY13284	Canola	cytosol	15.38	4.79
CDY42882	Canola	nucleus	10.49	4.66
CDY63527	Canola	cytosol	8.39	3.59
CDX87920	Canola	cytosol	8.39	3.5
CDY20148	Canola	cytosol, peroxisome, plastid	9.09	3.26
CDX92096	Canola	nucleus	18.18	2.4
CDX95904	Canola	cytosol, nucleus, peroxisome	18.18	2.39
CDY18811	Canola	cytosol, nucleus, peroxisome	16.78	2.29
CDY46254	Canola	cytosol	1.4	2.06
CDY51604	Canola	cytosol	0.0	0.0
VIT_00s0264g00090.t01	Wine grape	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDY51545	EnsemblPlantsGene:GSBRNA2T00003722001	InterPro:PLipase_D_fam	KEGG:00564+3.1.4.4	KEGG:00565+3.1.4.4	MetaCyc:PWY-3561
MetaCyc:PWY-7039	PANTHER:PTHR18896	PANTHER:PTHR18896:SF65	ProteinID:CDY51545	ProteinID:CDY51545.1	SEG:seg
UniParc:UPI0004EEE7B7	UniProt:A0A078IKJ1	MapMan:35.1	:	:	:

Description

BnaC03g72910DBnaC03g72910D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078IKJ1]

Coordinates

chrLK033005:-:1..1712

Molecular Weight (calculated)

16707.3 Da

IEP (calculated)

4.917

GRAVY (calculated)

-0.127

Length

143 amino acids

Sequence
(BLAST)

001: MNTSDEETRH FFKNSSVQVI ICPRSDAEGA NNLIPMEIAL KVASKIRARE KFAAYIVIPM WPEGDPTNMF MQSILYWQYK TMQMMYQTIY KALVEAELDG
101: QYEPQDYLNF FCLGTREASD ETVYIYYVLK SLVKLVQKLL MTL

Best Arabidopsis Sequence Match ( AT4G11830.1 )
(BLAST)

001: MSMGGGSNHE FGQWLDQQLV PLATSSGSLM VELLHGRRIR KVDGEKSSKF TSDPYVTVSI SGAVIGRTFV ISNSENPVWM QHFDVPVAHS AAEVHFVVKD
101: NDPIGSKIIG VVGIPTKQLC SGNRIEGLFP ILNSSGKPCR KGAMLSLSIQ YTPMERMRLY QKGVGSGVEC VGVPGTYFPL RKGGRVTLYQ DAHVDDGTLP
201: SVHLDGGIQY RHGKCWEDMA DAIRRARRLI YITGWSVFHP VRLVRRNNDP TEGTLGELLK VKSQEGVRVL VLVWDDPTSM SFPGFSTKGL MNTSDEETRR
301: FFKHSSVQVL LCPRYGGKGH SFIKKSEVET IYTHHQKTMI VDAEAAQNRR KIVAFVGGLD LCNGRFDTPK HSLFGTLKTL HKDDFHNPNF VTTEDVGPRE
401: PWHDLHSKID GPAAYDVLAN FEERWMASKP RGIGKGRTSF DDSLLRINRI PDIMGLSEAS SANDNDPESW HVQVFRSIDS TSVKGFPKDP EEATGRNLLC
501: GKNILIDMSI HAAYVKAIRS AQHFIYIENQ YFLGSSFNWD SNKDLGANNL IPMEIALKIA NKIRARENFA AYIVIPMWPE GAPTSKPIQR ILYWQHKTMQ
601: MMYQTIYKAL LEVGLDGQLE PQDFLNFFCL GNREVGTREV PDGTVNVYNC PRKPPQPNAA QVQALKSRRF MIYVHSKGMV VDDEFVLIGS ANINQRSLEG
701: TRDTEIAMGG YQPHHSWAKK GSRPRGQIFG YRMSLWAEHL GFLEQEFEEP ENMECVRRVR QLSELNWGQY AAEEVTEMSG HLLKYPVQVD KTGKVSSLPG
801: CETFPDLGGK IIGSFLTLQE NLTI

Arabidopsis Description

PLDGAMMA2Phospholipase D gamma 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9T051]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.