Factsheet for TraesCS3A01G130000.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
vacuole 2
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid, secretory
iPSORT:	plastid
MultiLoc:	vacuole
Predotar:	plastid
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

plastid: 22160430
golgi: 25769308
unclear: 25769308

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G149100.1	Wheat	unclear	99.26	99.26
TraesCS3D01G130900.1	Wheat	golgi	99.14	99.14
HORVU3Hr1G024530.2	Barley	plastid	97.17	97.17
KXG31749	Sorghum	cytosol	90.15	90.15
Os01t0172400-03	Rice	plastid	89.78	89.78
Zm00001d039670_P004	Maize	cytosol	89.78	89.78
Zm00001d008727_P002	Maize	cytosol	88.79	88.79
EES17463	Sorghum	cytosol	86.82	86.72
KRH44445	Soybean	cytosol	78.45	80.84
KRH47460	Soybean	cytosol	80.3	80.59
VIT_09s0002g06760.t01	Wine grape	cytosol	79.93	79.93
KRH23570	Soybean	endoplasmic reticulum	79.06	79.55
AT3G15730.1	Thale cress	cytosol	78.45	78.64
CDY21865	Canola	cytosol	77.59	77.59
TraesCS1A01G115300.1	Wheat	cytosol	77.83	77.55
CDX97705	Canola	cytosol	77.22	77.41
Bra027209.1-P	Field mustard	cytosol	77.22	77.41
CDY30108	Canola	cytosol	77.22	77.41
Bra040960.1-P	Field mustard	cytosol	77.34	77.34
Bra021132.1-P	Field mustard	cytosol	77.22	77.22
CDY47540	Canola	cytosol	77.22	77.22
AT1G52570.1	Thale cress	cytosol	76.85	77.04
Solyc08g066800.2.1	Tomato	plastid	76.48	76.95
PGSC0003DMT400024831	Potato	extracellular	76.23	76.7
CDY20149	Canola	cytosol, nucleus, peroxisome	20.07	76.53
CDY60551	Canola	cytosol	76.23	76.23
Bra030375.1-P	Field mustard	cytosol	76.11	76.11
KRH09736	Soybean	cytosol, endoplasmic reticulum, nucleus	65.64	74.96
Solyc08g066790.2.1	Tomato	plastid	74.38	74.85
PGSC0003DMT400024828	Potato	cytosol	11.58	74.02
CDY63527	Canola	cytosol	29.8	72.46
GSMUA_Achr10P...	Banana	cytosol, plastid	40.39	71.77
CDX87920	Canola	cytosol	29.93	70.85
CDY20148	Canola	cytosol, peroxisome, plastid	34.48	70.18
TraesCS7A01G376500.3	Wheat	cytosol	69.95	69.27
KRH09735	Soybean	cytosol	38.67	67.67
TraesCS1A01G373100.2	Wheat	plastid	63.18	61.58
TraesCS7A01G545000.1	Wheat	cytosol	55.3	54.36
TraesCS7A01G544900.1	Wheat	cytosol	50.99	53.49
TraesCS5A01G223500.1	Wheat	cytosol	49.01	48.18
TraesCS4A01G338500.1	Wheat	cytosol	7.39	46.88
TraesCS5A01G202000.1	Wheat	cytosol	46.06	44.58
TraesCS5A01G337100.2	Wheat	cytosol	46.43	43.74
TraesCS1A01G365100.2	Wheat	mitochondrion	43.72	42.87
TraesCS5A01G520900.1	Wheat	cytosol	43.84	42.84
TraesCS4A01G347800.3	Wheat	cytosol, nucleus, peroxisome	32.88	41.27
TraesCS6A01G071700.1	Wheat	cytosol, nucleus, plastid	39.29	36.71
TraesCS1A01G187400.1	Wheat	peroxisome	45.32	33.24
TraesCS1A01G228300.1	Wheat	cytosol, nucleus, peroxisome	24.63	17.97

Protein Annotations

KEGG:00564+3.1.4.4	KEGG:00565+3.1.4.4	Gene3D:2.60.40.150	Gene3D:3.30.870.10	MapMan:5.7.2.4.1	InterPro:C2_dom
InterPro:C2_domain_sf	GO:GO:0003674	GO:GO:0003824	GO:GO:0004630	GO:GO:0005488	GO:GO:0005509
GO:GO:0005575	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020
GO:GO:0016787	GO:GO:0046470	InterPro:IPR000008	InterPro:IPR001736	InterPro:IPR035892	PFAM:PF00168
PFAM:PF00614	PFAM:PF12357	PIRSF:PIRSF036470	InterPro:PLipase_D/transphosphatidylase	InterPro:PLipase_D_C	InterPro:PLipase_D_fam
InterPro:PLipase_D_pln	PFscan:PS50035	PANTHER:PTHR18896	PANTHER:PTHR18896:SF67	SMART:SM00155	SMART:SM00239
SUPFAM:SSF49562	SUPFAM:SSF56024	EnsemblPlantsGene:TraesCS3A01G130000	EnsemblPlants:TraesCS3A01G130000.1	TIGR:cd04015	TIGR:cd09199

Description

No Description!

Coordinates

chr3A:+:107076657..107079936

Molecular Weight (calculated)

92067.3 Da

IEP (calculated)

5.147

GRAVY (calculated)

-0.379

Length

812 amino acids

Sequence
(BLAST)

001: MAQILLHGNL HVTIFEASSL SHPGRASGGA PKFIRKFVEG IEETVGVGKG SSKLYATIDL EKARVGRTRM LGNEPVNPRW YESFHIYCAH LAADVIFTLK
101: ADNAIGATLI GRAYLPVGEL LEGEEIDRWL EICDDNREPV GESKIHVKLQ YFGVEKDRNW ARGVRSVKFP GVPYTFFSQR QGCNVRLYQD AHVPDNFIPK
201: IPLADGKNYE PARCWEDIFD AISNAQHLIY ITGWSVHTEI TLIRDTNRPK PGGDVTLGEL LKRKASEGVR VLMLVWDDRT SVGLLKRDGL MATHDEETAN
301: YFQGTDVHCV LCPRNPDDSG SIVQDLQIST MFTHHQKIVC VDDALPSQGS EQRRILSFVG GIDLCDGRYD TQYHSLFRTL DTVHHDDFHQ PNFATASITK
401: GGPREPWHDI HSRLEGPIAW DVLYNFEQRW RKQGGKDLLV QLRDLSDIII PPSPVMFPED RDTWNVQLFR SIDGGAAFGF PDTPEEAARA GLVSGKDQII
501: DRSIQDAYIN AIRRAKDFIY IENQYFLGSS YCWKPEGIKP EEIGALHVIP KELSLKIVSK IEAGERFTVY VVVPMWPEGM PESASVQAIL DWQRRTMEMM
601: YTDITQALEA KGIEANPKEY LTFFCLGNRE VKQDGEYEPQ EQPEPDTDYV RAQEARRFMI YVHTKMMIVD DEYIIIGSAN INQRSMDGAR DSEIAMGAYQ
701: PYHLANREPA RGQIHGFRMA LWYEHLGMLD DVFQRPESVE CVQKVNRIAE KYWDIYSSDD LEQDLPGHLL SYPIGVASDG VVTELPGMEF FPDTRARILG
801: AKSDYLPPIL TT

Best Arabidopsis Sequence Match ( AT3G15730.1 )
(BLAST)

001: MAQHLLHGTL HATIYEVDAL HGGGVRQGFL GKILANVEET IGVGKGETQL YATIDLQKAR VGRTRKIKNE PKNPKWYESF HIYCAHLASD IIFTVKDDNP
101: IGATLIGRAY IPVDQVINGE EVDQWVEILD NDRNPIQGGS KIHVKLQYFH VEEDRNWNMG IKSAKFPGVP YTFFSQRQGC KVSLYQDAHI PDNFVPRIPL
201: AGGKNYEPQR CWEDIFDAIS NAKHLIYITG WSVYAEIALV RDSRRPKPGG DVTIGELLKK KASEGVRVLL LVWDDRTSVD VLKKDGLMAT HDEETENFFR
301: GSDVHCILCP RNPDDGGSIV QSLQISTMFT HHQKIVVVDS EMPSRGGSEM RRIVSFVGGI DLCDGRYDTP FHSLFRTLDT VHHDDFHQPN FTGAAITKGG
401: PREPWHDIHS RLEGPIAWDV MYNFEQRWSK QGGKDILVKL RDLSDIIITP SPVMFQEDHD VWNVQLFRSI DGGAAAGFPE SPEAAAEAGL VSGKDNIIDR
501: SIQDAYIHAI RRAKDFIYVE NQYFLGSSFA WAADGITPED INALHLIPKE LSLKIVSKIE KGEKFRVYVV VPMWPEGLPE SGSVQAILDW QRRTMEMMYK
601: DVIQALRAQG LEEDPRNYLT FFCLGNREVK KDGEYEPAEK PDPDTDYMRA QEARRFMIYV HTKMMIVDDE YIIIGSANIN QRSMDGARDS EIAMGGYQPH
701: HLSHRQPARG QIHGFRMSLW YEHLGMLDET FLDPSSLECI EKVNRISDKY WDFYSSESLE HDLPGHLLRY PIGVASEGDI TELPGFEFFP DTKARILGTK
801: SDYLPPILTT

Arabidopsis Description

PLDALPHA1Phospholipase D alpha 1 [Source:UniProtKB/Swiss-Prot;Acc:Q38882]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.