CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus, cytosol

Predictor Summary:

nucleus 1
vacuole 2
plastid 1
cytosol 3
endoplasmic reticulum 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH23570	Soybean	endoplasmic reticulum	83.26	73.36
KRH44445	Soybean	cytosol	79.04	71.32
KRH47460	Soybean	cytosol	80.87	71.08
CDY20149	Canola	cytosol, nucleus, peroxisome	20.68	69.01
VIT_09s0002g06760.t01	Wine grape	cytosol	78.34	68.6
CDY21865	Canola	cytosol	77.07	67.49
KXG31749	Sorghum	cytosol	76.93	67.36
AT3G15730.1	Thale cress	cytosol	76.65	67.28
GSMUA_Achr7P10170_001	Banana	cytosol	51.05	67.22
Bra021132.1-P	Field mustard	cytosol	76.51	67.0
Bra027209.1-P	Field mustard	cytosol	76.09	66.79
CDX97705	Canola	cytosol	76.09	66.79
CDY30108	Canola	cytosol	76.09	66.79
Zm00001d008727_P002	Maize	cytosol	75.95	66.5
Os01t0172400-03	Rice	plastid	75.81	66.38
Zm00001d039670_P004	Maize	cytosol	75.67	66.26
AT1G52570.1	Thale cress	cytosol	75.25	66.05
TraesCS3B01G149100.1	Wheat	unclear	74.96	65.64
TraesCS3A01G130000.1	Wheat	plastid	74.96	65.64
EES17463	Sorghum	cytosol	74.96	65.56
TraesCS3D01G130900.1	Wheat	golgi	74.68	65.39
CDY60551	Canola	cytosol	74.4	65.15
Bra030375.1-P	Field mustard	cytosol	74.4	65.15
Bra040960.1-P	Field mustard	cytosol	74.4	65.15
CDY47540	Canola	cytosol	74.4	65.15
HORVU3Hr1G024530.2	Barley	plastid	74.26	65.02
KRH09735	Soybean	cytosol	42.33	64.87
OQU77524	Sorghum	plastid	70.46	61.02
Os05t0171000-01	Rice	plasma membrane	70.32	60.68
TraesCS1A01G115300.1	Wheat	cytosol	68.92	60.12
TraesCS1D01G116700.1	Wheat	cytosol	68.64	59.88
TraesCS1B01G135200.1	Wheat	cytosol	67.37	58.56
CDY20148	Canola	cytosol, peroxisome, plastid	32.77	58.4
HORVU1Hr1G025370.1	Barley	cytosol	69.34	57.66
KRH52443	Soybean	cytosol	63.99	55.08
Zm00001d037643_P001	Maize	cytosol	70.18	55.08
KRH61774	Soybean	cytosol	26.72	54.44
CDX87920	Canola	cytosol	26.16	54.23
KRH52444	Soybean	cytosol, plastid	61.74	53.47
CDY63527	Canola	cytosol	25.04	53.29
GSMUA_Achr10P...	Banana	cytosol, plastid	34.04	52.95
KRG89825	Soybean	cytoskeleton, cytosol, peroxisome	18.99	46.39
KRH10002	Soybean	cytosol	43.32	40.58
KRH76589	Soybean	extracellular	47.12	38.77
KRH60977	Soybean	cytosol	46.13	38.72
KRH28860	Soybean	mitochondrion	47.12	38.68
KRH59149	Soybean	cytosol	46.41	38.51
KRH51648	Soybean	cytosol	45.71	38.37
KRH43039	Soybean	cytosol	45.99	38.16
KRH47139	Soybean	cytosol	41.07	37.97
KRH44164	Soybean	cytosol	41.21	37.76
KRH77467	Soybean	nucleus	44.73	37.28
KRG93706	Soybean	nucleus	15.19	37.11
KRH37270	Soybean	cytosol	12.8	34.6
KRH65182	Soybean	cytosol	36.43	34.12
KRH48290	Soybean	nucleus	47.54	32.28
KRH76243	Soybean	cytosol	3.66	31.71
KRH77469	Soybean	nucleus	3.09	31.43
KRH77470	Soybean	cytosol	5.91	30.66
KRH70487	Soybean	cytosol	46.84	30.11
KRH01625	Soybean	cytosol	46.41	30.08
KRH23329	Soybean	cytosol	8.02	21.51
KRH05308	Soybean	endoplasmic reticulum	4.64	16.75
KRH16190	Soybean	cytosol	2.67	16.52
KRH12101	Soybean	plastid	23.63	14.96
KRG92923	Soybean	cytosol, nucleus, peroxisome	23.35	14.82
KRH37058	Soybean	plastid	23.35	14.74

Protein Annotations

KEGG:00564+3.1.4.4	KEGG:00565+3.1.4.4	Gene3D:2.60.40.150	Gene3D:3.30.870.10	MapMan:5.7.2.4.1	EMBL:ACUP02009109
InterPro:C2_dom	InterPro:C2_domain_sf	EnsemblPlantsGene:GLYMA_15G008500	GO:GO:0003674	GO:GO:0003824	GO:GO:0004630
GO:GO:0005488	GO:GO:0005509	GO:GO:0005575	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0016020	GO:GO:0016042	GO:GO:0016787	GO:GO:0046470
GO:GO:0070290	InterPro:IPR000008	InterPro:IPR001736	InterPro:IPR035892	UniProt:K7M8T2	EnsemblPlants:KRH09736
ProteinID:KRH09736	ProteinID:KRH09736.1	PFAM:PF00168	PFAM:PF00614	PFAM:PF12357	PIRSF:PIRSF036470
InterPro:PLipase_D/transphosphatidylase	InterPro:PLipase_D_C	InterPro:PLipase_D_fam	InterPro:PLipase_D_pln	PFscan:PS50004	PFscan:PS50035
PANTHER:PTHR18896	PANTHER:PTHR18896:SF114	MetaCyc:PWY-3561	MetaCyc:PWY-7039	SMART:SM00155	SMART:SM00239
SUPFAM:SSF49562	SUPFAM:SSF56024	UniParc:UPI000296021B	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr15:-:679168..684356

Molecular Weight (calculated)

81220.9 Da

IEP (calculated)

6.455

GRAVY (calculated)

-0.374

Length

711 amino acids

Sequence
(BLAST)

001: MTQILLHGTL QVTIYELDNL KAGSGGNILT KLVHNIEETI GIGKGITKLY ATIDLEKARV GRTRIIEKEH TNPKWYESFH IYCAHMASSI IFTVKDDNPI
101: GATLIGRAYR QGCKVSLYQD AHVPDNFVPK IPLAGGHTYQ PHRCWEDVFD AINNAQHLIY ITGWSVYTEI TLVRDSRRPK RRRCNTWVLM LVWDDRTSVP
201: LLKEDGLMAT HDEDTENYFY DSEVHCVLCP RNPDDGGSVV QDVEIFSMFS HHQKIVVVDS ALPNGRSDKR RIVSFVGGID FCDGRYDTQF HSLFRTLGTV
301: HHDDFHQPNF SHTSIKKGGP REPWHDIHSR LEGPIAWDVL FNFEQRWKKQ GGKDLLIPPK DLENVIIPPS VVTYPEDHEA WNVQLFRSID GGAAFGFPET
401: PEEAARSGLI SGKDNIIDRG IQDAYIKAIR RAKNFIYIEN QYFLGSCYAW SADGIKPEDI GALHLIPREL SLKIVSKIEA WERFSVYIVV PMWPEGYPEK
501: GTVQAILDWQ RRTMDMMYKD VVGALKGKGN EEDPLNYLTF FCLVNRELKK EGEYVPPERP DPHTDYMRAQ VSRRFMIYVH AKMMIVDDEY IIIGSANINQ
601: RSMDGARDSE VAMAAYQPYH LATKQPARGQ IHGFRMSLWY EHLGLLHDSF LHPESEECIE KQDLPGHLLR YPVAISSQGN VTQLQAFEFF PDTKAPILGA
701: KSDYIPPILT T

Best Arabidopsis Sequence Match ( AT1G52570.1 )
(BLAST)

001: MEECLLHGRL HATIYEVDHL HAEGGRSGFL GSILANVEET IGVGKGETQL YATIDLEKAR VGRTRKITKE PKNPKWFESF HIYCGHMAKH VIFTVKDANP
101: IGATLIGRGY IPVEDILHGE EVDRWVDILD NEKNPIAGGS KIHVKLQYFG VEKDKNWNRG IKSAKFPGVP YTFFSQRRGC KVSLYQDAHI PGNFVPKIPL
201: AGGKNYEPHR CWEDIFDAIT NAKHLIYITG WSVYTEISLV RDSRRPKQGG DVTVGELLKK KASEGVKVIL LVWDDRTSVD LLKKDGLMAT HDEETENFFR
301: GTDVNCILCP RNPDDGGSIV QNLQISTMFT HHQKIVVVDS EMPSGGSRSR RIVSFVGGLD LCDGRYDTPF HSLFRTLDTA HHDDFHQPNF TGAAITKGGP
401: REPWHDIHCR LEGPIAWDVL YNFEQRWSRQ GGKDILVKMR ELGDIIIPPS PVLFSEDHDV WNVQLFRSID GGAAAGFPDS PEAAAEAGLV SGKDNIIDRS
501: IQDAYIHAIR RAKDFIYIEN QYFLGSSFAW SADGIKPEEI NALHLIPKEL SLKIVSKIKA GEKFKVYVVV PMWPEGIPES GSVQAILDWQ KRTMEMMYKD
601: VIKALRENGL EGEDPRDYLT FFCLGNREVK KDGEYEPSEK PEPDTDYIRA QEARRFMIYV HTKMMIVDDE YIIIGSANIN QRSMDGARDS EIAMGGYQPY
701: HLSTRQPARG QIHGFRMSLW YEHLGMLDET FLDPSSQECI QKVNRVADKY WDLYSSESLE HDLPGHLLRY PIGIASEGNI TELPGCEFFP DTKARILGVK
801: SDYMPPILTT

Arabidopsis Description

PLDALPHA2Phospholipase D alpha 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SSQ9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.