CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 1
vacuole 1
cytosol 3
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

extracellular: 25724908

msms PMID: 25724908 doi

VC Clarke, PC Loughlin, A Gavrin, C Chen, EM Brear, DA Day, PM Smith

From the ‡University of Sydney, School of Biological Sciences, Sydney Australia;, From the ‡University of Sydney, School of Biological Sciences, Sydney Australia; penny.smith@sydney.edu.au., From the ‡University of Sydney, School of Biological Sciences, Sydney Australia; §Flinders University, School of Biological Sciences, Adelaide Australia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH28860	Soybean	mitochondrion	96.3	96.07
VIT_00s0264g00100.t01	Wine grape	cytosol	72.57	71.82
PGSC0003DMT400009253	Potato	cytosol	21.3	70.5
Bra017730.1-P	Field mustard	cytosol	68.17	70.2
AT4G35790.1	Thale cress	cytosol	70.37	70.05
Solyc02g083340.2.1	Tomato	nucleus	69.79	69.63
CDX72557	Canola	cytosol	69.68	69.6
Solyc02g061850.2.1	Tomato	cytosol	68.4	69.53
Zm00001d006262_P001	Maize	cytoskeleton, cytosol, peroxisome	12.38	69.48
GSMUA_Achr1P07360_001	Banana	cytosol	58.8	69.4
KRH60977	Soybean	cytosol	67.82	69.19
CDY47037	Canola	cytosol	70.25	68.59
GSMUA_AchrUn_...	Banana	cytosol	68.06	68.53
PGSC0003DMT400009250	Potato	cytosol	43.75	68.35
KRH51648	Soybean	cytosol	66.67	68.0
KXG36094	Sorghum	cytosol	66.78	67.17
KRH76243	Soybean	cytosol	6.37	67.07
Bra010512.1-P	Field mustard	cytosol	62.62	67.04
Os09t0543100-02	Rice	plasma membrane	65.62	66.39
CDY67335	Canola	cytosol	66.44	66.28
CDY41630	Canola	cytosol	66.32	66.09
TraesCS5A01G337100.2	Wheat	cytosol	65.86	66.01
Zm00001d006257_P009	Maize	cytosol	65.39	66.0
GSMUA_Achr1P14920_001	Banana	plastid	60.53	65.87
TraesCS5B01G336100.1	Wheat	cytosol	65.51	65.66
TraesCS5D01G341800.2	Wheat	cytosol	62.38	65.1
HORVU5Hr1G084740.4	Barley	plastid	52.55	63.5
GSMUA_Achr9P21120_001	Banana	nucleus	18.17	62.3
Zm00001d022594_P002	Maize	cytosol	63.54	62.03
KRH59149	Soybean	cytosol	60.53	61.03
GSMUA_Achr11P...	Banana	cytosol	58.45	60.7
KRH37270	Soybean	cytosol	18.4	60.46
KRH43039	Soybean	cytosol	59.61	60.09
KRG89825	Soybean	cytoskeleton, cytosol, peroxisome	19.33	57.39
KRH77467	Soybean	nucleus	50.46	51.11
KRH77469	Soybean	nucleus	4.05	50.0
OQU84227	Sorghum	cytosol	51.97	48.86
Zm00001d015033_P001	Maize	extracellular, plastid, vacuole	51.85	48.12
TraesCS6B01G096200.1	Wheat	cytosol	47.8	47.75
KRH47460	Soybean	cytosol	44.56	47.59
KRG93706	Soybean	nucleus	15.97	47.42
KRH44445	Soybean	cytosol	43.06	47.21
TraesCS6A01G071700.1	Wheat	cytosol, nucleus, plastid	47.45	47.18
KRH09736	Soybean	cytosol, endoplasmic reticulum, nucleus	38.77	47.12
HORVU6Hr1G012780.6	Barley	cytosol, nucleus, plastid	46.53	46.26
KRH23570	Soybean	endoplasmic reticulum	42.94	45.97
KRH65182	Soybean	cytosol	39.58	45.06
KRH48290	Soybean	nucleus	53.24	43.94
KRH52443	Soybean	cytosol	41.9	43.83
KRH77470	Soybean	cytosol	6.94	43.8
KRH52444	Soybean	cytosol, plastid	41.09	43.24
KRH70487	Soybean	cytosol	52.31	40.87
KRH01625	Soybean	cytosol	51.85	40.84
KRH09735	Soybean	cytosol	21.88	40.73
KRH61774	Soybean	cytosol	16.2	40.11
KRH10002	Soybean	cytosol	35.19	40.05
KRH44164	Soybean	cytosol	34.84	38.79
KRH47139	Soybean	cytosol	34.49	38.75
KRH23329	Soybean	cytosol	8.33	27.17
Os02t0120200-01	Rice	extracellular	23.5	22.31
KRH16190	Soybean	cytosol	2.78	20.87
KRH05308	Soybean	endoplasmic reticulum	4.17	18.27
KRH12101	Soybean	plastid	23.15	17.81
KRH37058	Soybean	plastid	22.92	17.58
KRG92923	Soybean	cytosol, nucleus, peroxisome	22.57	17.41

Protein Annotations

KEGG:00564+3.1.4.4	KEGG:00565+3.1.4.4	EntrezGene:100801787	Gene3D:3.30.870.10	MapMan:5.7.2.4.3	EMBL:ACUP02000626
InterPro:C2_dom	EnsemblPlantsGene:GLYMA_01G162100	GO:GO:0003674	GO:GO:0003824	GO:GO:0004630	GO:GO:0005488
GO:GO:0005509	GO:GO:0005575	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0016020	GO:GO:0016042	GO:GO:0016787	GO:GO:0046470	GO:GO:0070290
UniProt:I1J8G3	InterPro:IPR000008	InterPro:IPR001736	EnsemblPlants:KRH76589	ProteinID:KRH76589	ProteinID:KRH76589.1
PFAM:PF00168	PFAM:PF00614	PFAM:PF12357	PFAM:PF13091	PIRSF:PIRSF036470	InterPro:PLD-like_dom
InterPro:PLipase_D/transphosphatidylase	InterPro:PLipase_D_C	InterPro:PLipase_D_fam	InterPro:PLipase_D_pln	PFscan:PS50004	PFscan:PS50035
PANTHER:PTHR18896	PANTHER:PTHR18896:SF86	MetaCyc:PWY-3561	MetaCyc:PWY-7039	SMART:SM00155	SMART:SM00239
SUPFAM:SSF49562	SUPFAM:SSF56024	UniParc:UPI00023373CE	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:50010636..50018986

Molecular Weight (calculated)

98124.8 Da

IEP (calculated)

7.033

GRAVY (calculated)

-0.430

Length

864 amino acids

Sequence
(BLAST)

001: MADTGGGDDN GVTYLHGDLD LKIIEARHLP NMDIFSERLR RCVTACDTIK FHSEAPAGGG GAGQRKHHHP RIITSDPYVT VSVPQATVAR TRVLKNSPNP
101: VWEEQFNIPL AHPVVDLEFR VKDDDVFGAQ TMGTVKVPAR RIATGAKISE WFPILLPSGK PPKPDTALHV EMKFTPVWEN LLYQRGIAAD PEHNGVRHTY
201: FPVRKGSSVR LYQDAHCTES GEGKLPEIKL ENGNVYRHEK CWEDICYAIS EAHHMVYLVG WSIYHKVRLV REPTRPLPRG GDLTLGELLK YKSEEGVRVL
301: LLVWDDKTSH DKVFLKTAGV MGTHDEETRK FFKHSSVMCV LSPRYASNKM SFLKQQVVGT VFTHHQKCVI VDTQAAGNNR KITAFIGGLD LCDGRYDTPE
401: HRLFRNLDDV FDGDFHNPTF SAGTRVPRQP WHDLHCRIDG PAAYDVLINF EQRWRKATKW KEFAILFKKS SQWHDDALIR IERISWILSP SGAATLKDKS
501: DDYTVPEDDP LVWVSSEDDP ENWHVQIFRS IDSGSLKGFP KRVDVALSQN LICAKNLVID KSIQTAYIQA IRSAQHFIYI ENQYFIGSSY AWPAYKDAGA
601: DNLIPMELAL KIASKIRAKE RFAVYIVLPM WPEGDPKTGA MQEILFWQGQ TMQMMYDAVA RELKSMQLTD VHPQDYLNFY CLGNREHFNE DSSSTNGAQV
701: STAYKYRRFM IYVHAKGMIV DDEYVIIGSA NINQRSMAGT KDTEIAMGAY QPHYTWSAKK RHPHGQIYGY RMSLWGEHLG MLDETFEEPE RLECVHKVNK
801: IADNNWKLFA SEDFSLLQGH LLKYPVQVDS DGKIRSLPDC ENFPDAGGKI LGAHSTTIPD ILTT

Best Arabidopsis Sequence Match ( AT4G35790.2 )
(BLAST)

001: MAEKVSEDVM LLHGDLDLKI VKARRLPNMD MFSEHLRRLF TACNACARPT DTDDVDPRDK GEFGDKNIRS HRKVITSDPY VTVVVPQATL ARTRVLKNSQ
101: EPLWDEKFNI SIAHPFAYLE FQVKDDDVFG AQIIGTAKIP VRDIASGERI SGWFPVLGAS GKPPKAETAI FIDMKFTPFD QIHSYRCGIA GDPERRGVRR
201: TYFPVRKGSQ VRLYQDAHVM DGTLPAIGLD NGKVYEHGKC WEDICYAISE AHHMIYIVGW SIFHKIKLVR ETKVPRDKDM TLGELLKYKS QEGVRVLLLV
301: WDDKTSHDKF GIKTPGVMGT HDEETRKFFK HSSVICVLSP RYASSKLGLF KQQVVGTLFT HHQKCVLVDT QAVGNNRKVT AFIGGLDLCD GRYDTPEHRI
401: LHDLDTVFKD DFHNPTFPAG TKAPRQPWHD LHCRIDGPAA YDVLINFEQR WRKATRWKEF SLRLKGKTHW QDDALIRIGR ISWILSPVFK FLKDGTSIIP
501: EDDPCVWVSK EDDPENWHVQ IFRSIDSGSV KGFPKYEDEA EAQHLECAKR LVVDKSIQTA YIQTIRSAQH FIYIENQYFL GSSYAWPSYR DAGADNLIPM
601: ELALKIVSKI RAKERFAVYV VIPLWPEGDP KSGPVQEILY WQSQTMQMMY DVIAKELKAV QSDAHPLDYL NFYCLGKREQ LPDDMPATNG SVVSDSYNFQ
701: RFMIYVHAKG MIVDDEYVLM GSANINQRSM AGTKDTEIAM GAYQPNHTWA HKGRHPRGQV YGYRMSLWAE HLGKTGDEFV EPSDLECLKK VNTISEENWK
801: RFIDPKFSEL QGHLIKYPLQ VDVDGKVSPL PDYETFPDVG GKIIGAHSMA LPDTLTT

Arabidopsis Description

PLDDELTAPhospholipase D delta [Source:UniProtKB/Swiss-Prot;Acc:Q9C5Y0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.