Factsheet for Solyc08g066800.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
vacuole 2
cytosol 3
endoplasmic reticulum 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
extracellular: 22364583
plastid: 22908117
plastid: 26371478
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400024831	Potato	extracellular	96.9	96.9
Solyc08g066790.2.1	Tomato	plastid	88.6	88.6
GSMUA_Achr7P10170_001	Banana	cytosol	51.42	76.85
TraesCS3D01G130900.1	Wheat	golgi	77.2	76.72
TraesCS3B01G149100.1	Wheat	unclear	77.08	76.6
TraesCS3A01G130000.1	Wheat	plastid	76.95	76.48
HORVU3Hr1G024530.2	Barley	plastid	76.83	76.35
KXG31749	Sorghum	cytosol	76.83	76.35
Zm00001d008727_P002	Maize	cytosol	76.33	75.86
Solyc06g068090.2.1	Tomato	plastid	75.96	75.77
Zm00001d039670_P004	Maize	cytosol	76.21	75.74
Os01t0172400-03	Rice	plastid	75.34	74.88
EES17463	Sorghum	cytosol	74.47	73.92
Solyc03g116620.2.1	Tomato	plastid	71.87	71.52
TraesCS1D01G116700.1	Wheat	cytosol	70.63	69.94
OQU77524	Sorghum	plastid	71.13	69.91
TraesCS1A01G115300.1	Wheat	cytosol	70.51	69.82
Os05t0171000-01	Rice	plasma membrane	71.13	69.66
TraesCS1B01G135200.1	Wheat	cytosol	69.02	68.09
HORVU1Hr1G025370.1	Barley	cytosol	71.25	67.25
GSMUA_Achr10P...	Banana	cytosol, plastid	35.69	63.02
Zm00001d037643_P001	Maize	cytosol	70.63	62.91
Solyc12g011170.1.1	Tomato	cytosol	62.83	59.79
Solyc08g045740.1.1	Tomato	cytosol	18.84	55.68
Solyc01g103900.2.1	Tomato	cytosol	11.03	53.94
Solyc04g082000.2.1	Tomato	cytosol	47.09	45.29
Solyc10g024370.1.1	Tomato	cytosol	46.34	44.58
Solyc08g080130.2.1	Tomato	nucleus	45.85	43.74
Solyc02g061850.2.1	Tomato	cytosol	45.35	43.06
Solyc02g083340.2.1	Tomato	nucleus	44.86	41.8
Solyc01g103910.1.1	Tomato	cytosol	35.81	41.46
Solyc01g091910.2.1	Tomato	plastid	44.98	40.56
Solyc04g051140.1.1	Tomato	cytosol	9.91	39.8
Solyc10g017650.1.1	Tomato	cytosol	45.48	32.8
Solyc01g100020.2.1	Tomato	cytosol, nucleus, peroxisome	24.78	19.01
Solyc01g065720.2.1	Tomato	cytosol	25.15	18.35

Protein Annotations

KEGG:00564+3.1.4.4	KEGG:00565+3.1.4.4	Gene3D:2.60.40.150	Gene3D:3.30.870.10	MapMan:5.7.2.4.1	InterPro:C2_dom
InterPro:C2_domain_sf	GO:GO:0003674	GO:GO:0003824	GO:GO:0004630	GO:GO:0005488	GO:GO:0005509
GO:GO:0005575	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0016020	GO:GO:0016042	GO:GO:0016787	GO:GO:0046470	GO:GO:0070290	InterPro:IPR000008
InterPro:IPR001736	InterPro:IPR035892	UniProt:K4CLQ6	PFAM:PF00168	PFAM:PF00614	PFAM:PF12357
PIRSF:PIRSF036470	InterPro:PLipase_D/transphosphatidylase	InterPro:PLipase_D_C	InterPro:PLipase_D_fam	InterPro:PLipase_D_pln	PFscan:PS50035
PANTHER:PTHR18896	PANTHER:PTHR18896:SF109	SMART:SM00155	SMART:SM00239	SUPFAM:SSF49562	SUPFAM:SSF56024
EnsemblPlantsGene:Solyc08g066800.2	EnsemblPlants:Solyc08g066800.2.1	UniParc:UPI000276BEAE	SEG:seg	:	:

Description

Phospholipase D [Source:UniProtKB/TrEMBL;Acc:K4CLQ6]

Coordinates

chr8:+:55656586..55663074

Molecular Weight (calculated)

92032.7 Da

IEP (calculated)

5.870

GRAVY (calculated)

-0.360

Length

807 amino acids

Sequence
(BLAST)

001: MAQILLHGTL HVTIFEVDKL RTNFGREIFN KVVQGIEGAI GFNKTASTLY ATIDLGKARV GRTRLLDEHK NPRWYESFHI YCAHMASDVV FTVKADNPIG
101: AELIGRAYLP VEQLIVGEVV DEWLEILDTE RKPVHGHSKI HVKLQYFDVT REYNWNRGIR VTRFPGVPYT FFSQRQGCKI TLYQDSHVPD NFVPKIPLAG
201: GNFYEPQRCW EDIFDAITNA KHLIYITGWS VYTEITLIRD MRRPKPGGDI TLGELLKKKA NEGVRVLMLV WDDRTSVPVL KEDGLMATHD QETAAYFENS
301: EVHCVLCPRN PDDGRSIIQN IEIGTMFTHH QKIVVVDGEL PNGDTERRRI VSYIGGIDLC DGRYDTQFHS LFRTLDTAHH DDFHQPNFTG ASIQKGGPRE
401: PWHDIHCRIE GPAAWDVLFN FEQRWRKQGG KDLLMNLRDI ESIIIPPSPA MYPDDHDTWN VQVFRSIDGG AAFGFPDAPE EAAKSGLISG KDNIIDRSIQ
501: DGYINAIRRA NHFIYIENQY FLGSSFSWYS DDIKDEEINA LHLIPKELSL KIVSKIEAGE RFTVYVVVPM WPEGLPESAS VQAILDWQRR TMKMMYTDII
601: QALKAKGIVA NPKDYLSFFC LGNRETKKTG EYEPSESPEP DSDYQKAQEA RRFMIYVHAK MMIVDDEYII IGSANINQRS MDGARDSEIA MGAYQPFHLY
701: AKEPARGQVH GFRMALWYEH LGMLDNSFLQ PESVECIRKV NKIGDKYWDM YSSESLVHDL PGHLLTYPIG ITENGEVTEI PGVECFPDTK APILGTKSNF
801: LPPILTT

Best Arabidopsis Sequence Match ( AT3G15730.1 )
(BLAST)

001: MAQHLLHGTL HATIYEVDAL HGGGVRQGFL GKILANVEET IGVGKGETQL YATIDLQKAR VGRTRKIKNE PKNPKWYESF HIYCAHLASD IIFTVKDDNP
101: IGATLIGRAY IPVDQVINGE EVDQWVEILD NDRNPIQGGS KIHVKLQYFH VEEDRNWNMG IKSAKFPGVP YTFFSQRQGC KVSLYQDAHI PDNFVPRIPL
201: AGGKNYEPQR CWEDIFDAIS NAKHLIYITG WSVYAEIALV RDSRRPKPGG DVTIGELLKK KASEGVRVLL LVWDDRTSVD VLKKDGLMAT HDEETENFFR
301: GSDVHCILCP RNPDDGGSIV QSLQISTMFT HHQKIVVVDS EMPSRGGSEM RRIVSFVGGI DLCDGRYDTP FHSLFRTLDT VHHDDFHQPN FTGAAITKGG
401: PREPWHDIHS RLEGPIAWDV MYNFEQRWSK QGGKDILVKL RDLSDIIITP SPVMFQEDHD VWNVQLFRSI DGGAAAGFPE SPEAAAEAGL VSGKDNIIDR
501: SIQDAYIHAI RRAKDFIYVE NQYFLGSSFA WAADGITPED INALHLIPKE LSLKIVSKIE KGEKFRVYVV VPMWPEGLPE SGSVQAILDW QRRTMEMMYK
601: DVIQALRAQG LEEDPRNYLT FFCLGNREVK KDGEYEPAEK PDPDTDYMRA QEARRFMIYV HTKMMIVDDE YIIIGSANIN QRSMDGARDS EIAMGGYQPH
701: HLSHRQPARG QIHGFRMSLW YEHLGMLDET FLDPSSLECI EKVNRISDKY WDFYSSESLE HDLPGHLLRY PIGVASEGDI TELPGFEFFP DTKARILGTK
801: SDYLPPILTT

Arabidopsis Description

PLDALPHA1Phospholipase D alpha 1 [Source:UniProtKB/Swiss-Prot;Acc:Q38882]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.