Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
19621931
golgi: 25047511 nucleus: 26035336 plastid: 27992503 extracellular: 28232208 |
msms PMID:
26035336
doi
§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.
msms PMID:
27992503
doi
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
msms PMID:
25047511
doi
Beijing Key Laboratory of Gene Resource and Molecular Development, Beijing Normal University, College of Life Sciences, Beijing, P. R. China.
msms PMID:
28232208
doi
Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea., Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea. Electronic address: stkim71@pusan.ac.kr., Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju, South Korea., National Academy of Agricultural Science, Rural Development Administration, Suwon 441-707, South Korea. Electronic address: srpark@korea.kr., Plant Proteomics Group, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal; Faculty of Health and Sport Sciences, Tsukuba International Academy for Sport Studies (TIAS), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, 305-8574, Ibaraki, Japan.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER91265 | Sorghum | nucleus | 50.92 | 55.5 |
| Zm00001d013757_P010 | Maize | nucleus | 49.5 | 53.29 |
| Zm00001d033159_P001 | Maize | nucleus | 33.85 | 53.24 |
| GSMUA_Achr9P09240_001 | Banana | nucleus | 17.35 | 40.26 |
| TraesCS4B01G148100.1 | Wheat | nucleus | 54.91 | 39.71 |
| TraesCS4A01G137900.1 | Wheat | nucleus | 54.2 | 38.96 |
| GSMUA_Achr6P35030_001 | Banana | nucleus | 29.3 | 38.94 |
| HORVU4Hr1G035250.1 | Barley | nucleus | 54.34 | 38.55 |
| TraesCS4D01G153300.1 | Wheat | nucleus | 54.48 | 38.22 |
| GSMUA_Achr4P23560_001 | Banana | nucleus | 29.02 | 38.06 |
| PGSC0003DMT400037344 | Potato | endoplasmic reticulum, vacuole | 18.07 | 36.49 |
| Solyc10g006000.2.1 | Tomato | nucleus | 26.88 | 34.12 |
| VIT_19s0015g00430.t01 | Wine grape | nucleus | 26.88 | 31.55 |
| Solyc07g065490.2.1 | Tomato | nucleus | 26.88 | 29.81 |
| KRG98507 | Soybean | nucleus | 29.73 | 28.44 |
| KRH46360 | Soybean | nucleus | 29.73 | 28.24 |
| Os01t0924900-01 | Rice | nucleus | 20.2 | 27.9 |
| Bra027748.1-P | Field mustard | nucleus | 6.97 | 27.84 |
| PGSC0003DMT400057390 | Potato | extracellular, nucleus | 26.46 | 27.23 |
| CDX94304 | Canola | nucleus | 16.93 | 27.23 |
| CDY06563 | Canola | nucleus | 26.32 | 26.93 |
| CDX89318 | Canola | nucleus | 25.75 | 25.71 |
| KRG98502 | Soybean | nucleus | 26.17 | 25.21 |
| KRH46364 | Soybean | nucleus | 28.73 | 25.03 |
| CDY20754 | Canola | nucleus | 28.02 | 24.81 |
| Bra035582.1-P | Field mustard | nucleus | 28.02 | 24.81 |
| Bra026415.1-P | Field mustard | nucleus | 29.16 | 24.55 |
| AT4G26630.1 | Thale cress | nucleus | 26.6 | 24.51 |
| CDY28645 | Canola | nucleus | 26.6 | 23.58 |
| AT5G55660.1 | Thale cress | nucleus | 25.6 | 23.14 |
| Bra002880.1-P | Field mustard | endoplasmic reticulum | 28.31 | 23.01 |
| CDY17352 | Canola | extracellular, vacuole | 26.88 | 22.83 |
| CDX97358 | Canola | nucleus | 28.73 | 16.65 |
| Bra010432.1-P | Field mustard | nucleus | 25.18 | 15.65 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:35.2 | EntrezGene:4333378 | ProteinID:ABF97451.1 | ProteinID:BAF12518.1 | ProteinID:BAS85164.1 |
| ncoils:Coil | InterPro:DEK_C | GO:GO:0003674 | GO:GO:0003682 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006259 |
| GO:GO:0006338 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016043 |
| GO:GO:0042393 | GO:GO:2000779 | EnsemblPlantsGene:Os03g0596900 | EnsemblPlants:Os03t0596900-01 | PFAM:PF08766 | PANTHER:PTHR13468 |
| PANTHER:PTHR13468:SF8 | UniProt:Q10H93 | SUPFAM:SSF109715 | UniParc:UPI0000DB4E48 | RefSeq:XP_015631223.1 | SEG:seg |
Description
GTP-binding signal recognition particle SRP54, G-domain containing protein. (Os03t0596900-01);Hypothetical conserved gene. (Os03t0596900-02);Hypothetical conserved gene. (Os03t0596900-03)
Coordinates
chr3:-:22219267..22227186
Molecular Weight (calculated)
77891.7 Da
IEP (calculated)
4.764
GRAVY (calculated)
-1.457
Length
703 amino acids
Sequence
(BLAST)
(BLAST)
001: MPEEDPASAM EETAVANGGA ADDVAAPDKD NDIKEKAGKG NEVAVENKNA EEQNKGGSEN GTKGPSDGDV EMAEAETAKE SDVKQLDTED AKKDGAQDAD
101: ANEEKNTKDT EGEDVKMAEA EAEAGNADVK DTAEKEDKDE NTNTEKQELK DAKESGSEKQ EELKEQDKSG SEKQEELKEQ DKSGLAEYEE KKAEEESGAE
201: KQGEEEAEEK GSADNDNEEG DKNANISDEH LKKDGGKDGN KDEAEEEEVS EADKKVEENK EETPKNKKAR SARDRSQGKD KKQDGSKSRE AKSLLNTASP
301: YGTDRPQRER KTVERLVEVI EKEPNRNFVV EKGRGTPLKD IPSVAHRISR KKPADLKFLH NVLFGRKGKT VDFKGHILQF SGFVWHESDE KQRAKAKEKL
401: DKCVKDMLLE LCWILAIPTP KANIRKEDIV AKLLDFIAEP HAMADSGHSD DQGSNSRKRK RGSTPKSSSK KFDDDDDITP SKKRNKALEY DTDEDEDDAD
501: PMKSDSEEDD YDSEKEKAKK NSSDAKDTAS KKKAATGSSH KTGTPRTVSK SSSKTPSSKV SKEKESPEDS AKVFSRKKKS VTPKRPSSSE KEIKDKKSSG
601: KKVTKGKGES AEVGLPSKDE LRKTITEILK KVDFNTATFS DILKKLEDRY KIDLTPRKSA IKIMIQEELT RLSKEDDDED EDEDGNEDAE KKKPQHQAKE
701: VVA
101: ANEEKNTKDT EGEDVKMAEA EAEAGNADVK DTAEKEDKDE NTNTEKQELK DAKESGSEKQ EELKEQDKSG SEKQEELKEQ DKSGLAEYEE KKAEEESGAE
201: KQGEEEAEEK GSADNDNEEG DKNANISDEH LKKDGGKDGN KDEAEEEEVS EADKKVEENK EETPKNKKAR SARDRSQGKD KKQDGSKSRE AKSLLNTASP
301: YGTDRPQRER KTVERLVEVI EKEPNRNFVV EKGRGTPLKD IPSVAHRISR KKPADLKFLH NVLFGRKGKT VDFKGHILQF SGFVWHESDE KQRAKAKEKL
401: DKCVKDMLLE LCWILAIPTP KANIRKEDIV AKLLDFIAEP HAMADSGHSD DQGSNSRKRK RGSTPKSSSK KFDDDDDITP SKKRNKALEY DTDEDEDDAD
501: PMKSDSEEDD YDSEKEKAKK NSSDAKDTAS KKKAATGSSH KTGTPRTVSK SSSKTPSSKV SKEKESPEDS AKVFSRKKKS VTPKRPSSSE KEIKDKKSSG
601: KKVTKGKGES AEVGLPSKDE LRKTITEILK KVDFNTATFS DILKKLEDRY KIDLTPRKSA IKIMIQEELT RLSKEDDDED EDEDGNEDAE KKKPQHQAKE
701: VVA
001: MATETLELKT PQLADTVAVT EKDTETKKKD EVEKDEAMEE KGEEIDGEKV KSPVTPVSER PIRERKRTGR YVIDTPPRSS GNKPLSITQG RGTRLKEIPN
101: VAYKLSKRKP DDNLFLLHTI LYGKKAKAQM LKKNIGQFSG FVWSEQEEEK QRAKAKEKLD KCIKEKLIDF CDVLDIPVNK STVKKEELAV RVLEFLVCPK
201: ATRDILLADS EKETKKRKKS TSKNVTSGES SHVPAKRRRQ AKKQEQPTET EGNGESDVGS EGTNDSNGED DVAPEEENNK SEDTETEDEK DKAKEKTKST
301: DKKRLSKRTK KEKPAAEEEK SIKGSAKSSR KSFRQVDKST TSSSKKQKVD KDDSSKEKGK TQTSKPQAKG SKDQGQSRKK GKKEPTRKEL HVVVTKILKE
401: VDFNTATLSD ILRKLGSHFG IDLMHRKAEV KDIITDAINE MSDDDDEKEE DTEDEGEKEG KD
101: VAYKLSKRKP DDNLFLLHTI LYGKKAKAQM LKKNIGQFSG FVWSEQEEEK QRAKAKEKLD KCIKEKLIDF CDVLDIPVNK STVKKEELAV RVLEFLVCPK
201: ATRDILLADS EKETKKRKKS TSKNVTSGES SHVPAKRRRQ AKKQEQPTET EGNGESDVGS EGTNDSNGED DVAPEEENNK SEDTETEDEK DKAKEKTKST
301: DKKRLSKRTK KEKPAAEEEK SIKGSAKSSR KSFRQVDKST TSSSKKQKVD KDDSSKEKGK TQTSKPQAKG SKDQGQSRKK GKKEPTRKEL HVVVTKILKE
401: VDFNTATLSD ILRKLGSHFG IDLMHRKAEV KDIITDAINE MSDDDDEKEE DTEDEGEKEG KD
Arabidopsis Description
At3g48710 [Source:UniProtKB/TrEMBL;Acc:Q9SMM8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.