Factsheet for Os06t0148600-01

Subcellular Localization

min:

: max

Winner_takes_all: golgi, plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
plastid 2
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d044521_P001	Maize	cytosol, mitochondrion	0.25	0.73
Zm00001d024117_P001	Maize	cytosol, mitochondrion	0.25	0.73
Os06t0148200-01	Rice	extracellular	0.51	0.57
PGSC0003DMT400076811	Potato	cytosol	0.25	0.47
KRH05981	Soybean	extracellular	0.25	0.27
KRH17464	Soybean	extracellular	0.25	0.27
CDY15394	Canola	extracellular	0.0	0.0
VIT_09s0002g03050.t01	Wine grape	extracellular	0.0	0.0
TraesCS7D01G346800.1	Wheat	cytosol, extracellular, mitochondrion	0.0	0.0
Os06t0149100-01	Rice	cytosol	0.0	0.0
Os03t0683800-01	Rice	plastid	0.0	0.0
KRH61021	Soybean	mitochondrion	0.0	0.0
HORVU1Hr1G065930.2	Barley	mitochondrion	0.0	0.0
AT1G20135.1	Thale cress	extracellular, plasma membrane	0.0	0.0
Bra029234.1-P	Field mustard	plasma membrane	0.0	0.0
Bra024605.1-P	Field mustard	extracellular	0.0	0.0
Bra014533.1-P	Field mustard	cytosol, mitochondrion	0.0	0.0
Bra012377.1-P	Field mustard	extracellular	0.0	0.0
Bra008229.1-P	Field mustard	extracellular, plasma membrane	0.0	0.0
AT5G63170.1	Thale cress	endoplasmic reticulum, extracellular, plasma membrane	0.0	0.0
AT1G75930.1	Thale cress	extracellular, plasma membrane	0.0	0.0
AT1G75920.1	Thale cress	plasma membrane	0.0	0.0
AT1G75910.1	Thale cress	endoplasmic reticulum, plasma membrane	0.0	0.0
AT1G73610.1	Thale cress	endoplasmic reticulum, extracellular, plasma membrane	0.0	0.0
AT1G23500.1	Thale cress	endoplasmic reticulum, extracellular, plasma membrane	0.0	0.0

Protein Annotations

Gene3D:1.20.1280.50	MapMan:35.2	EntrezGene:4340131	EMBL:AK063946	EMBL:AK121786	ProteinID:BAD68622.1
ProteinID:BAF18725.1	ProteinID:BAS96164.1	InterPro:DUF295	InterPro:F-box-like_dom_sf	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	EnsemblPlantsGene:Os06g0148600	EnsemblPlants:Os06t0148600-01	PFAM:PF03478	PANTHER:PTHR33110	PANTHER:PTHR33110:SF5
UniProt:Q5VPK3	SUPFAM:SSF81383	UniParc:UPI0000457F1D	RefSeq:XP_015641296.1	RefSeq:XP_015641297.1	SEG:seg

Description

F-box protein 292Cyclin-like F-box domain containing protein. (Os06t0148600-01)

Coordinates

chr6:+:2529103..2531645

Molecular Weight (calculated)

44315.9 Da

IEP (calculated)

5.107

GRAVY (calculated)

-0.135

Length

393 amino acids

Sequence
(BLAST)

001: MMAATQSSSW ADLQMDILGL VLRRLPSLAD RVRLRAVCRP WRSNAQLLTL PPPFPWLNLL DGTFLSISDG EIHRMPLPDD ASCYGSIDNW LFLTDSDDGC
101: SLMNPFSKAT LQLPKLARIW HHERGNAYNA CTRLFYKLAV PLPLDLSSDS LVAVLMNDPL RHSVVCIVHR SISTDSFRFH DRPIKNNFYD IAFCGGKLYA
201: LSCGKLFTVE MSEVHIEKPK VPHVECIVED FPTESHSQPC PENHICVTWP YLVASGGRLL NVIRLVGVPF PPEDDDDIFK DSLTFSFEVY EADLNTGSRM
301: WRRVESLGDQ ALFVGRHYSK SLSAAEYVGA QEDCIYFMCD DYFRSDEDPL CDAGIYNMRS GVITPLLQEN TAPRLHPTGE GHPTWFFPAD GAM

Best Arabidopsis Sequence Match ( AT2G33200.1 )
(BLAST)

001: MSRTRYDWSK LCHDILRLIL ESLHYKDYHR ARTVCSNWYT ASTTCKRPLY PWRIKFNKIS TSLFDPREDK IHEIQHPGIE FSDRNVLASC SNWFLMVDSG
101: LEFYLLNAFT RERINLPSME SSILGKERLE KEVAWKHFIE RTDIISTKKQ ACLWINERTG DYVVAWSIKQ HYLFTYKKGD DSWLNLEGTK CVSMALNKDY
201: KLYVYALDNS IKIFDLYGEF PSEIVEENPY RNHPFSFRFV SKPEEHAWKQ VVAITNSGEV LMIVSLKGLE DKRLFYIYKM DFGSCNWERV DSLGGEMLIF
301: GHGVTIRAPI LDINGLGIKS DSICFRGDDL WPLSQLFIPI TQPMCGVFDL ATSTITWPKS LDASVLKSFW FVPGHA

Arabidopsis Description

Putative F-box protein At2g33200 [Source:UniProtKB/Swiss-Prot;Acc:O49315]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.