Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 7
- golgi 5
- plasma membrane 5
- endoplasmic reticulum 6
- vacuole 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY56196 | Canola | vacuole | 37.7 | 12.85 |
| CDY30167 | Canola | extracellular | 36.89 | 12.71 |
| CDY43409 | Canola | extracellular, plasma membrane | 32.79 | 11.76 |
| CDY67584 | Canola | extracellular, plasma membrane | 31.15 | 11.14 |
| CDY13524 | Canola | extracellular, plasma membrane | 31.15 | 11.14 |
| CDY39069 | Canola | extracellular, plasma membrane | 31.15 | 11.14 |
| CDX80889 | Canola | extracellular, plasma membrane | 31.97 | 11.05 |
| CDX89030 | Canola | plasma membrane | 27.05 | 11.0 |
| CDY04898 | Canola | extracellular, plasma membrane | 31.15 | 10.86 |
| CDX76226 | Canola | extracellular, plasma membrane | 31.15 | 10.83 |
| CDY14175 | Canola | extracellular, plasma membrane | 28.69 | 10.7 |
| CDY11271 | Canola | extracellular, plasma membrane | 31.97 | 10.63 |
| CDY45771 | Canola | extracellular, plasma membrane | 29.51 | 10.56 |
| CDX95394 | Canola | extracellular | 30.33 | 10.54 |
| CDY45740 | Canola | plasma membrane | 28.69 | 10.36 |
| CDY30744 | Canola | extracellular | 28.69 | 10.36 |
| CDX75880 | Canola | vacuole | 26.23 | 10.32 |
| CDY54290 | Canola | extracellular | 25.41 | 10.3 |
| CDY04705 | Canola | cytosol, mitochondrion, plasma membrane, plastid | 28.69 | 9.86 |
| CDY50286 | Canola | extracellular | 28.69 | 9.72 |
| CDY09169 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 28.69 | 9.7 |
| CDY25788 | Canola | extracellular | 27.05 | 9.68 |
| CDY44153 | Canola | cytosol | 27.87 | 9.66 |
| CDX96486 | Canola | extracellular, plasma membrane | 26.23 | 9.44 |
| CDX72994 | Canola | extracellular | 26.23 | 9.44 |
| HORVU1Hr1G065930.2 | Barley | mitochondrion | 29.51 | 9.05 |
| CDY54289 | Canola | extracellular | 25.41 | 9.01 |
| CDY67583 | Canola | extracellular | 24.59 | 8.75 |
| CDY57589 | Canola | plasma membrane | 32.79 | 8.57 |
| CDY13523 | Canola | golgi, plasma membrane, plastid | 13.93 | 4.9 |
| CDX85927 | Canola | extracellular, mitochondrion, plastid | 2.46 | 2.17 |
| TraesCS7D01G346800.1 | Wheat | cytosol, extracellular, mitochondrion | 2.46 | 2.14 |
| Zm00001d024117_P001 | Maize | cytosol, mitochondrion | 0.82 | 0.73 |
| Zm00001d044521_P001 | Maize | cytosol, mitochondrion | 0.82 | 0.73 |
| CDY39070 | Canola | extracellular | 0.82 | 0.68 |
| CDY15393 | Canola | cytosol | 0.82 | 0.45 |
| Os06t0148600-01 | Rice | cytosol, golgi, nucleus, plastid | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDY15394 | EnsemblPlantsGene:GSBRNA2T00085700001 | Gene3D:3.40.50.1110 | InterPro:IPR036514 | InterPro:SGNH_hydro_sf | PANTHER:PTHR22835 |
| PANTHER:PTHR22835:SF152 | ProteinID:CDY15394 | ProteinID:CDY15394.1 | SEG:seg | SignalP:SignalP-noTM | TMHMM:TMhelix |
| UniParc:UPI0004EEB7D9 | UniProt:A0A078FR79 | MapMan:35.1 | : | : | : |
Description
BnaC04g42290DBnaC04g42290D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FR79]
Coordinates
chrLK032054:-:590549..590917
Molecular Weight (calculated)
13561.2 Da
IEP (calculated)
8.745
GRAVY (calculated)
-0.080
Length
122 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTSNTITFI LFIATTLLAS CNAAENAASQ PLFPAILIFG DSTVDTGNNN YPINTFFRAT HLPYGIDLPN HEANGRFSNG KLIPDILAAK YNIKQLVPPF
101: LQPNLSDQEN RSMFCISRRR LR
101: LQPNLSDQEN RSMFCISRRR LR
001: MWTSKTISFT LFITTTLLGS CNASAKAKTQ PLFPAILIFG DSTVDTGNNN YPSQTIFRAK HVPYGIDLPN HSPNGRFSNG KIFSDIIATK LNIKQFVPPF
101: LQPNLTDQEI VTGVCFASAG AGYDDQTSLT TQAIRVSEQP NMFKSYIARL KSIVGDKKAM KIINNALVVV SAGPNDFILN YYEVPSWRRM YPSISDYQDF
201: VLSRLNNFVK ELYSLGCRKI LVGGLPPMGC LPIQMTAQFR NVLRFCLEQE NRDSVLYNQK LQKLLPQTQA SLTGSKILYS DVYDPMMEML QNPSKYGFKE
301: TTRGCCGTGF LETSFMCNAY SSMCQNRSEF LFFDSIHPSE ATYNYIGNVL DTKIRGWLKA
101: LQPNLTDQEI VTGVCFASAG AGYDDQTSLT TQAIRVSEQP NMFKSYIARL KSIVGDKKAM KIINNALVVV SAGPNDFILN YYEVPSWRRM YPSISDYQDF
201: VLSRLNNFVK ELYSLGCRKI LVGGLPPMGC LPIQMTAQFR NVLRFCLEQE NRDSVLYNQK LQKLLPQTQA SLTGSKILYS DVYDPMMEML QNPSKYGFKE
301: TTRGCCGTGF LETSFMCNAY SSMCQNRSEF LFFDSIHPSE ATYNYIGNVL DTKIRGWLKA
Arabidopsis Description
RXF26GDSL esterase/lipase At1g58430 [Source:UniProtKB/Swiss-Prot;Acc:Q9C648]
SUBAcon: [vacuole]
SUBAcon: [vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.