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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • extracellular 7
  • endoplasmic reticulum 5
  • vacuole 6
  • plasma membrane 5
  • golgi 5
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:secretory
BaCelLo:secretory
iPSORT:secretory
MultiLoc:extracellular
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:extracellular
YLoc:vacuole
PPI

Inferred distinct locusB in Crop

locusBlocations
CDY03088
CDY17621

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G16370.1 CDY03088 AT2G01950.1 19000166
AT3G16370.1 CDY17621 AT2G01950.1 19000166
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY56196 Canola vacuole 99.15 98.04
AT3G16370.1 Thale cress endoplasmic reticulum, vacuole 88.7 88.95
KRH23361 Soybean nucleus 72.03 72.24
KRH47190 Soybean nucleus 71.47 71.67
KRH44252 Soybean nucleus 72.32 70.14
KRH09971 Soybean nucleus 67.23 69.59
VIT_09s0002g03140.t01 Wine grape extracellular 69.77 69.38
Solyc03g121180.2.1 Tomato nucleus 68.36 67.41
PGSC0003DMT400006459 Potato extracellular 68.08 67.13
Os06t0148200-01 Rice extracellular 64.97 65.53
PGSC0003DMT400006461 Potato extracellular 63.56 62.67
TraesCS4A01G397000.1 Wheat extracellular 61.86 62.39
TraesCS7D01G093200.1 Wheat extracellular 61.86 62.39
GSMUA_Achr7P08930_001 Banana endoplasmic reticulum, extracellular 62.99 62.12
TraesCS7A01G097100.1 Wheat golgi 61.3 61.82
GSMUA_Achr2P16800_001 Banana extracellular, vacuole 62.43 61.73
EER87840 Sorghum extracellular, vacuole 62.43 61.39
Zm00001d011661_P001 Maize extracellular 61.3 60.78
VIT_09s0002g03150.t01 Wine grape extracellular 58.47 58.31
CDX80889 Canola extracellular, plasma membrane 56.21 56.37
HORVU7Hr1G021310.7 Barley extracellular 61.86 55.58
CDY09169 Canola endoplasmic reticulum, extracellular, plasma membrane 56.5 55.4
HORVU7Hr1G021630.2 Barley cytosol, plastid 42.37 55.35
CDY50286 Canola extracellular 56.21 55.28
CDY04898 Canola extracellular, plasma membrane 53.67 54.29
Solyc03g121170.2.1 Tomato nucleus 63.28 53.72
TraesCS7D01G094000.1 Wheat extracellular 52.82 53.28
CDY11271 Canola extracellular, plasma membrane 55.08 53.13
HORVU7Hr1G021460.4 Barley extracellular 52.82 53.12
TraesCS4A01G397900.1 Wheat extracellular 52.82 52.82
CDY14175 Canola extracellular, plasma membrane 48.59 52.6
CDX95394 Canola extracellular 51.69 52.14
TraesCS7D01G094500.1 Wheat extracellular 51.98 52.12
CDX75880 Canola vacuole 45.2 51.61
TraesCS4A01G398600.1 Wheat extracellular 51.41 51.56
HORVU2Hr1G002340.1 Barley cytosol, plastid 37.57 51.55
TraesCS7A01G099900.1 Wheat extracellular, golgi, plasma membrane 52.26 51.53
TraesCS4A01G398500.1 Wheat plasma membrane 51.13 51.27
TraesCS4A01G398700.1 Wheat extracellular 51.69 51.12
CDX76226 Canola extracellular, plasma membrane 50.56 51.0
HORVU7Hr1G021580.1 Barley extracellular 50.85 50.99
Zm00001d036175_P001 Maize endoplasmic reticulum, extracellular, vacuole 50.85 50.14
EER87852 Sorghum extracellular 50.85 49.86
TraesCS4A01G399300.1 Wheat endoplasmic reticulum 50.28 49.17
HORVU7Hr1G021620.2 Barley endoplasmic reticulum, golgi, mitochondrion 50.56 48.64
TraesCS7D01G094900.1 Wheat endoplasmic reticulum, golgi 49.72 48.62
TraesCS7A01G100600.1 Wheat endoplasmic reticulum, golgi 50.0 48.36
TraesCS7A01G100200.1 Wheat extracellular 43.5 45.56
TraesCS3D01G431500.1 Wheat endoplasmic reticulum, golgi 50.56 45.32
Os06t0149100-01 Rice cytosol 19.49 42.07
HORVU0Hr1G019420.1 Barley endoplasmic reticulum, mitochondrion 27.12 41.38
CDY15394 Canola extracellular 12.71 36.89
CDX85927 Canola extracellular, mitochondrion, plastid 13.84 35.51
CDY45740 Canola plasma membrane 32.77 34.32
CDY30744 Canola extracellular 32.77 34.32
CDY25788 Canola extracellular 33.05 34.31
CDY39069 Canola extracellular, plasma membrane 32.77 34.02
CDY13524 Canola extracellular, plasma membrane 32.77 34.02
CDY67584 Canola extracellular, plasma membrane 32.77 34.02
CDX96486 Canola extracellular, plasma membrane 32.49 33.92
CDX72994 Canola extracellular 32.49 33.92
CDY44153 Canola cytosol 33.62 33.81
CDY39070 Canola extracellular 14.12 33.78
CDY15393 Canola cytosol 20.62 33.18
CDY45771 Canola extracellular, plasma membrane 31.92 33.14
CDY04705 Canola cytosol, mitochondrion, plasma membrane, plastid 33.05 32.96
CDY54289 Canola extracellular 31.92 32.85
CDX89030 Canola plasma membrane 27.4 32.33
CDY67583 Canola extracellular 31.07 32.07
CDY43409 Canola extracellular, plasma membrane 30.79 32.06
CDY13523 Canola golgi, plasma membrane, plastid 26.55 27.09
CDY57589 Canola plasma membrane 30.23 22.91
CDY54290 Canola extracellular 18.93 22.26
Protein Annotations
Gene3D:3.40.50.1110MapMan:35.1GO:A0A078GY56UniProt:A0A078GY56EnsemblPlants:CDY30167ProteinID:CDY30167
ProteinID:CDY30167.1ncoils:CoilInterPro:GDSLGO:GO:0003674GO:GO:0003824GO:GO:0016787
GO:GO:0016788EnsemblPlantsGene:GSBRNA2T00044749001InterPro:IPR036514PFAM:PF00657PANTHER:PTHR22835PANTHER:PTHR22835:SF134
InterPro:SGNH_hydro_sfInterPro:SGNH_plant_lipase_likeSUPFAM:SSF52266SignalP:SignalP-noTMUniParc:UPI0004EEC877SEG:seg
Description
BnaC05g36950DBnaC05g36950D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GY56]
Coordinates
chrLK032249:+:460150..461917
Molecular Weight (calculated)
38364.8 Da
IEP (calculated)
8.492
GRAVY (calculated)
-0.015
Length
354 amino acids
Sequence
(BLAST)
001: MTSCLLLLLV STYSVLQISF AQDAPTSLFP GMMIFGDSVV DVGNNNYLPT LFRADYPPYG RDFAGHKPTG RFCNGKLATD ITAETLGFTK YPPAYLSPEA
101: SGKNLLIGAN FASAASGYDD KAALLNHAIP LYQQVEYYKE YKRKLIKVAG SKQADTIIKG SIYLLSAGSS DFVQNYYVNP LVNKFYTADQ YGSMLIDNFS
201: TFIKQVYAVG ARKIGVTSLP PTGCLPAART LFGYHEKGCV SRLNTDAQQF NKKLNAAASK LQKQYSGLKI VVFDIFTPLY DLVQSPAKSG FTEATKGCCG
301: TGTVETTSLL CNPKSYGTCT NATQYVFWDS VHPSEAANEI LATALIGQGF SLIG
Best Arabidopsis Sequence Match ( AT3G16370.1 )
(BLAST)
001: MDRCTSSFLL LTLVSTLSIL QISFAQLVPA IMTFGDSVVD VGNNNYLPTL FRADYPPYGR DFANHKATGR FCNGKLATDI TAETLGFTKY PPAYLSPEAS
101: GKNLLIGANF ASAASGYDDK AALLNHAIPL YQQVEYFKEY KSKLIKIAGS KKADSIIKGA ICLLSAGSSD FVQNYYVNPL LYKVYTVDAY GSFLIDNFST
201: FIKQVYAVGA RKIGVTSLPP TGCLPAARTL FGFHEKGCVS RLNTDAQNFN KKLNAAASKL QKQYSDLKIV VFDIYSPLYD LVQNPSKSGF TEATKGCCGT
301: GTVETTSLLC NPKSFGTCSN ATQYVFWDSV HPSEAANEIL ATALIGQGFS LLG
Arabidopsis Description
APGGDSL esterase/lipase APG [Source:UniProtKB/Swiss-Prot;Acc:Q9LU14]
SUBAcon: [endoplasmic reticulum,vacuole]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.