Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- mitochondrion 1
- extracellular 4
- endoplasmic reticulum 2
- vacuole 3
- plasma membrane 2
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU3Hr1G018030.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G16370.1 | HORVU3Hr1G018030.1 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G398600.1 | Wheat | extracellular | 86.12 | 86.12 |
| Os06t0148200-01 | Rice | extracellular | 64.87 | 65.24 |
| EER87840 | Sorghum | extracellular, vacuole | 64.87 | 63.61 |
| HORVU7Hr1G021460.4 | Barley | extracellular | 62.61 | 62.78 |
| HORVU7Hr1G021630.2 | Barley | cytosol, plastid | 47.59 | 61.99 |
| Zm00001d011661_P001 | Maize | extracellular | 62.04 | 61.34 |
| HORVU2Hr1G002340.1 | Barley | cytosol, plastid | 44.76 | 61.24 |
| GSMUA_Achr2P16800_001 | Banana | extracellular, vacuole | 59.21 | 58.38 |
| VIT_09s0002g03140.t01 | Wine grape | extracellular | 56.66 | 56.18 |
| GSMUA_Achr7P08930_001 | Banana | endoplasmic reticulum, extracellular | 56.66 | 55.71 |
| HORVU7Hr1G021310.7 | Barley | extracellular | 61.47 | 55.08 |
| KRH23361 | Soybean | nucleus | 53.54 | 53.54 |
| KRH47190 | Soybean | nucleus | 53.26 | 53.26 |
| AT3G16370.1 | Thale cress | endoplasmic reticulum, vacuole | 52.69 | 52.69 |
| KRH09971 | Soybean | nucleus | 50.71 | 52.34 |
| PGSC0003DMT400006459 | Potato | extracellular | 52.97 | 52.09 |
| Solyc03g121180.2.1 | Tomato | nucleus | 52.97 | 52.09 |
| KRH44252 | Soybean | nucleus | 53.82 | 52.05 |
| Bra027168.1-P | Field mustard | extracellular | 51.56 | 51.41 |
| CDY56196 | Canola | vacuole | 51.84 | 51.12 |
| CDY30167 | Canola | extracellular | 50.99 | 50.85 |
| PGSC0003DMT400006461 | Potato | extracellular | 50.14 | 49.3 |
| VIT_09s0002g03150.t01 | Wine grape | extracellular | 47.31 | 47.04 |
| HORVU7Hr1G021620.2 | Barley | endoplasmic reticulum, golgi, mitochondrion | 46.74 | 44.84 |
| HORVU4Hr1G004100.1 | Barley | endoplasmic reticulum, plasma membrane | 46.18 | 44.41 |
| Solyc03g121170.2.1 | Tomato | nucleus | 50.14 | 42.45 |
| HORVU0Hr1G019420.1 | Barley | endoplasmic reticulum, mitochondrion | 23.8 | 36.21 |
| CDX75880 | Canola | vacuole | 28.61 | 32.58 |
| HORVU3Hr1G089960.1 | Barley | plastid | 14.45 | 24.88 |
| HORVU1Hr1G065930.2 | Barley | mitochondrion | 19.26 | 17.09 |
Protein Annotations
| EnsemblPlants:HORVU7Hr1G021580.1 | EnsemblPlantsGene:HORVU7Hr1G021580 | Gene3D:3.40.50.1110 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0016787 |
| GO:GO:0016788 | InterPro:GDSL | InterPro:IPR036514 | InterPro:SGNH_hydro_sf | InterPro:SGNH_plant_lipase_like | PANTHER:PTHR22835 |
| PANTHER:PTHR22835:SF134 | PFAM:PF00657 | SEG:seg | SignalP:SignalP-noTM | SUPFAM:SSF52266 | UniParc:UPI000B467DF7 |
| UniProt:A0A287VN66 | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chrchr7H:-:31073808..31075326
Molecular Weight (calculated)
38179.1 Da
IEP (calculated)
9.243
GRAVY (calculated)
0.192
Length
353 amino acids
Sequence
(BLAST)
(BLAST)
001: MMLRCLLLVA IFFLTGPTTH GGQSQALVPA VFVFGDSFVD VGNNDYILTV AKANFPPYGR DFKNHVATGR FGNGKLLSDI IGEKVGFTGS PPAYLSIRSS
101: GHNLITGANF ASAGSGSYDP TSLVLKVIPL SQQLEYFKEY KSKLAVVTGK SQSQSIISGA LYIISSGSND LALNYYINPL LFKTLTIDQY ADLIVSILSN
201: TVTQLHGMGA RRIGVFSLPP LGCFPAAITV FGLRKSGCVS RINRGVQIYN KKLNIAVNTL SRQYHDLKIA VLDTYKPLYN IVNSPRSQGF FEARRSCCGT
301: GIIETSVFLC NPLSIGTCPN ATSYVFWDSA HPSEKTNQLI VDSFLPELGS LVA
101: GHNLITGANF ASAGSGSYDP TSLVLKVIPL SQQLEYFKEY KSKLAVVTGK SQSQSIISGA LYIISSGSND LALNYYINPL LFKTLTIDQY ADLIVSILSN
201: TVTQLHGMGA RRIGVFSLPP LGCFPAAITV FGLRKSGCVS RINRGVQIYN KKLNIAVNTL SRQYHDLKIA VLDTYKPLYN IVNSPRSQGF FEARRSCCGT
301: GIIETSVFLC NPLSIGTCPN ATSYVFWDSA HPSEKTNQLI VDSFLPELGS LVA
001: MDRCTSSFLL LTLVSTLSIL QISFAQLVPA IMTFGDSVVD VGNNNYLPTL FRADYPPYGR DFANHKATGR FCNGKLATDI TAETLGFTKY PPAYLSPEAS
101: GKNLLIGANF ASAASGYDDK AALLNHAIPL YQQVEYFKEY KSKLIKIAGS KKADSIIKGA ICLLSAGSSD FVQNYYVNPL LYKVYTVDAY GSFLIDNFST
201: FIKQVYAVGA RKIGVTSLPP TGCLPAARTL FGFHEKGCVS RLNTDAQNFN KKLNAAASKL QKQYSDLKIV VFDIYSPLYD LVQNPSKSGF TEATKGCCGT
301: GTVETTSLLC NPKSFGTCSN ATQYVFWDSV HPSEAANEIL ATALIGQGFS LLG
101: GKNLLIGANF ASAASGYDDK AALLNHAIPL YQQVEYFKEY KSKLIKIAGS KKADSIIKGA ICLLSAGSSD FVQNYYVNPL LYKVYTVDAY GSFLIDNFST
201: FIKQVYAVGA RKIGVTSLPP TGCLPAARTL FGFHEKGCVS RLNTDAQNFN KKLNAAASKL QKQYSDLKIV VFDIYSPLYD LVQNPSKSGF TEATKGCCGT
301: GTVETTSLLC NPKSFGTCSN ATQYVFWDSV HPSEAANEIL ATALIGQGFS LLG
Arabidopsis Description
APGGDSL esterase/lipase APG [Source:UniProtKB/Swiss-Prot;Acc:Q9LU14]
SUBAcon: [endoplasmic reticulum,vacuole]
SUBAcon: [endoplasmic reticulum,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.