Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- mitochondrion 1
- extracellular 5
- endoplasmic reticulum 3
- vacuole 4
- plasma membrane 3
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS3A01G099400.1 | |
| TraesCS3B01G115800.1 | |
| TraesCS3D01G099700.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G16370.1 | TraesCS3A01G099400.1 | AT2G01950.1 | 19000166 |
| AT3G16370.1 | TraesCS3B01G115800.1 | AT2G01950.1 | 19000166 |
| AT3G16370.1 | TraesCS3D01G099700.1 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU7Hr1G021580.1 | Barley | extracellular | 86.12 | 86.12 |
| TraesCS4A01G398500.1 | Wheat | plasma membrane | 66.86 | 66.86 |
| EER87840 | Sorghum | extracellular, vacuole | 67.99 | 66.67 |
| Os06t0148200-01 | Rice | extracellular | 66.29 | 66.67 |
| TraesCS7A01G099900.1 | Wheat | extracellular, golgi, plasma membrane | 67.14 | 66.02 |
| TraesCS4A01G397900.1 | Wheat | extracellular | 65.72 | 65.54 |
| TraesCS4A01G397000.1 | Wheat | extracellular | 64.31 | 64.67 |
| TraesCS7A01G097100.1 | Wheat | golgi | 63.74 | 64.1 |
| Zm00001d011661_P001 | Maize | extracellular | 64.59 | 63.87 |
| TraesCS4A01G398700.1 | Wheat | extracellular | 62.32 | 61.45 |
| GSMUA_Achr2P16800_001 | Banana | extracellular, vacuole | 59.21 | 58.38 |
| TraesCS7A01G100200.1 | Wheat | extracellular | 54.96 | 57.4 |
| GSMUA_Achr7P08930_001 | Banana | endoplasmic reticulum, extracellular | 57.22 | 56.27 |
| VIT_09s0002g03140.t01 | Wine grape | extracellular | 56.66 | 56.18 |
| AT3G16370.1 | Thale cress | endoplasmic reticulum, vacuole | 52.97 | 52.97 |
| Bra027168.1-P | Field mustard | extracellular | 52.12 | 51.98 |
| KRH23361 | Soybean | nucleus | 51.84 | 51.84 |
| CDY56196 | Canola | vacuole | 52.41 | 51.68 |
| KRH47190 | Soybean | nucleus | 51.56 | 51.56 |
| CDY30167 | Canola | extracellular | 51.56 | 51.41 |
| Solyc03g121180.2.1 | Tomato | nucleus | 51.56 | 50.7 |
| PGSC0003DMT400006459 | Potato | extracellular | 51.27 | 50.42 |
| KRH44252 | Soybean | nucleus | 52.12 | 50.41 |
| KRH09971 | Soybean | nucleus | 48.16 | 49.71 |
| TraesCS4A01G399300.1 | Wheat | endoplasmic reticulum | 49.29 | 48.07 |
| VIT_09s0002g03150.t01 | Wine grape | extracellular | 47.88 | 47.61 |
| PGSC0003DMT400006461 | Potato | extracellular | 48.16 | 47.35 |
| TraesCS4A01G285700.1 | Wheat | endoplasmic reticulum, plasma membrane | 46.74 | 46.74 |
| TraesCS7A01G100600.1 | Wheat | endoplasmic reticulum, golgi | 48.44 | 46.72 |
| Solyc03g121170.2.1 | Tomato | nucleus | 48.44 | 41.01 |
| CDX75880 | Canola | vacuole | 28.05 | 31.94 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G398600.1 | EnsemblPlantsGene:TraesCS4A01G398600 | Gene3D:3.40.50.1110 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0016787 |
| GO:GO:0016788 | InterPro:GDSL | InterPro:IPR036514 | InterPro:SGNH_hydro_sf | InterPro:SGNH_plant_lipase_like | PANTHER:PTHR22835 |
| PANTHER:PTHR22835:SF134 | PFAM:PF00657 | SEG:seg | SignalP:SignalP-noTM | SUPFAM:SSF52266 | TIGR:cd01837 |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr4A:+:673675386..673676892
Molecular Weight (calculated)
38235.1 Da
IEP (calculated)
8.612
GRAVY (calculated)
0.153
Length
353 amino acids
Sequence
(BLAST)
(BLAST)
001: MMLRCLLLLA IFFLTGPTTH GGESRPVVPA VFLFGDSLVD VGNNDYFLTV AKANFPPYGR DFKNQVATGR FGNGKLLSDI IAEKVGFTGS PPPYLGMRAS
101: GQNLMTGANF ASAGSGYYDP TALEFKVIPL SQQLEYFKEY KSKLTVVAGN SQSHAIISGA LYIISAGSND FGPNYYINPL LFKTLTVDQF ADLIVSIFSN
201: TVTQLHGMGA RRIGVFSLPP LGCFPLAITV FGHGRGGCVS RLNRGSQIYN KKLNIAVNTL SRQYHDLKIA VLDIYTPLYN IANSPRSQGF IEARRSCCAT
301: GTIETSVFLC NPLSIGTCPN ATSYVYWDVA HPSEKTNQLI VDSFLVELGS LAA
101: GQNLMTGANF ASAGSGYYDP TALEFKVIPL SQQLEYFKEY KSKLTVVAGN SQSHAIISGA LYIISAGSND FGPNYYINPL LFKTLTVDQF ADLIVSIFSN
201: TVTQLHGMGA RRIGVFSLPP LGCFPLAITV FGHGRGGCVS RLNRGSQIYN KKLNIAVNTL SRQYHDLKIA VLDIYTPLYN IANSPRSQGF IEARRSCCAT
301: GTIETSVFLC NPLSIGTCPN ATSYVYWDVA HPSEKTNQLI VDSFLVELGS LAA
001: MDRCTSSFLL LTLVSTLSIL QISFAQLVPA IMTFGDSVVD VGNNNYLPTL FRADYPPYGR DFANHKATGR FCNGKLATDI TAETLGFTKY PPAYLSPEAS
101: GKNLLIGANF ASAASGYDDK AALLNHAIPL YQQVEYFKEY KSKLIKIAGS KKADSIIKGA ICLLSAGSSD FVQNYYVNPL LYKVYTVDAY GSFLIDNFST
201: FIKQVYAVGA RKIGVTSLPP TGCLPAARTL FGFHEKGCVS RLNTDAQNFN KKLNAAASKL QKQYSDLKIV VFDIYSPLYD LVQNPSKSGF TEATKGCCGT
301: GTVETTSLLC NPKSFGTCSN ATQYVFWDSV HPSEAANEIL ATALIGQGFS LLG
101: GKNLLIGANF ASAASGYDDK AALLNHAIPL YQQVEYFKEY KSKLIKIAGS KKADSIIKGA ICLLSAGSSD FVQNYYVNPL LYKVYTVDAY GSFLIDNFST
201: FIKQVYAVGA RKIGVTSLPP TGCLPAARTL FGFHEKGCVS RLNTDAQNFN KKLNAAASKL QKQYSDLKIV VFDIYSPLYD LVQNPSKSGF TEATKGCCGT
301: GTVETTSLLC NPKSFGTCSN ATQYVFWDSV HPSEAANEIL ATALIGQGFS LLG
Arabidopsis Description
APGGDSL esterase/lipase APG [Source:UniProtKB/Swiss-Prot;Acc:Q9LU14]
SUBAcon: [endoplasmic reticulum,vacuole]
SUBAcon: [endoplasmic reticulum,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.