Subcellular Localization
min:
: max
Winner_takes_all: golgi, endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- extracellular 4
- golgi 5
- plasma membrane 4
- endoplasmic reticulum 5
- vacuole 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS3A01G099400.1 | |
| TraesCS3B01G115800.1 | |
| TraesCS3D01G099700.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G16370.1 | TraesCS3A01G099400.1 | AT2G01950.1 | 19000166 |
| AT3G16370.1 | TraesCS3B01G115800.1 | AT2G01950.1 | 19000166 |
| AT3G16370.1 | TraesCS3D01G099700.1 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G094900.1 | Wheat | endoplasmic reticulum, golgi | 95.9 | 96.96 |
| TraesCS4A01G399300.1 | Wheat | endoplasmic reticulum | 94.54 | 95.58 |
| HORVU7Hr1G021620.2 | Barley | endoplasmic reticulum, golgi, mitochondrion | 93.17 | 92.66 |
| Zm00001d036175_P001 | Maize | endoplasmic reticulum, extracellular, vacuole | 74.59 | 76.04 |
| EER87852 | Sorghum | extracellular | 74.32 | 75.35 |
| HORVU0Hr1G019420.1 | Barley | endoplasmic reticulum, mitochondrion | 45.9 | 72.41 |
| Os06t0149100-01 | Rice | cytosol | 29.23 | 65.24 |
| VIT_09s0002g03140.t01 | Wine grape | extracellular | 53.28 | 54.78 |
| TraesCS7A01G097100.1 | Wheat | golgi | 51.91 | 54.13 |
| TraesCS4A01G397000.1 | Wheat | extracellular | 51.91 | 54.13 |
| GSMUA_Achr7P08930_001 | Banana | endoplasmic reticulum, extracellular | 52.19 | 53.2 |
| GSMUA_Achr2P16800_001 | Banana | extracellular, vacuole | 51.64 | 52.79 |
| VIT_09s0002g03150.t01 | Wine grape | extracellular | 50.82 | 52.39 |
| KRH23361 | Soybean | nucleus | 49.45 | 51.27 |
| KRH47190 | Soybean | nucleus | 49.45 | 51.27 |
| Bra027168.1-P | Field mustard | extracellular | 49.18 | 50.85 |
| CDY56196 | Canola | vacuole | 49.45 | 50.56 |
| AT3G16370.1 | Thale cress | endoplasmic reticulum, vacuole | 48.63 | 50.42 |
| Solyc03g121180.2.1 | Tomato | nucleus | 49.45 | 50.42 |
| PGSC0003DMT400006459 | Potato | extracellular | 49.45 | 50.42 |
| CDY30167 | Canola | extracellular | 48.36 | 50.0 |
| KRH44252 | Soybean | nucleus | 49.73 | 49.86 |
| KRH09971 | Soybean | nucleus | 46.17 | 49.42 |
| PGSC0003DMT400006461 | Potato | extracellular | 48.36 | 49.3 |
| TraesCS4A01G285700.1 | Wheat | endoplasmic reticulum, plasma membrane | 46.99 | 48.73 |
| TraesCS4A01G398600.1 | Wheat | extracellular | 46.72 | 48.44 |
| TraesCS4A01G397900.1 | Wheat | extracellular | 46.17 | 47.74 |
| TraesCS7A01G099900.1 | Wheat | extracellular, golgi, plasma membrane | 46.72 | 47.63 |
| TraesCS4A01G398500.1 | Wheat | plasma membrane | 45.9 | 47.59 |
| TraesCS4A01G398700.1 | Wheat | extracellular | 45.9 | 46.93 |
| Solyc03g121170.2.1 | Tomato | nucleus | 49.45 | 43.41 |
| TraesCS7A01G100200.1 | Wheat | extracellular | 37.43 | 40.53 |
| CDX75880 | Canola | vacuole | 26.78 | 31.61 |
Protein Annotations
| Gene3D:3.40.50.1110 | MapMan:35.1 | InterPro:GDSL | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0016787 |
| GO:GO:0016788 | InterPro:IPR036514 | PFAM:PF00657 | PFscan:PS51257 | PANTHER:PTHR22835 | PANTHER:PTHR22835:SF251 |
| InterPro:SGNH_hydro_sf | InterPro:SGNH_plant_lipase_like | SUPFAM:SSF52266 | SignalP:SignalP-noTM | EnsemblPlantsGene:TraesCS7A01G100600 | EnsemblPlants:TraesCS7A01G100600.1 |
| TIGR:cd01837 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr7A:+:61804914..61806572
Molecular Weight (calculated)
39287.9 Da
IEP (calculated)
9.406
GRAVY (calculated)
-0.076
Length
366 amino acids
Sequence
(BLAST)
(BLAST)
001: MSPSRSSSPA MQRMIALVAL SLLLSCGVHG QVVPAVISFG DSTIDVGNNN YLPGAVFKAN YAPYGENFRR HKATGRFSDG KIVTDITAET LGFEGYAPPY
101: LSPLASGKNL LTGANFGSAA SSYSDDTAAM YDAITLSQQL KYYKEYRSKL AAVAGRRQAR TILAEALYVV STGTGDFIQN YYHNASLSAR YDVDRYCDLL
201: VGIFSGFADE LYRLGARRIG VTTMPPLGCL PATIRLYGGK GRSGGGGCLP RLNRDAETFN RKLNATVGAL VRRHAGLKVA VFDVYTPLRD LSERPAAHGF
301: AEARRTCCRT GKAGTRVYLC DPATSKAARM CRNASSYVYF DGVHPSEAAN LVVAESLVSA GIDLLT
101: LSPLASGKNL LTGANFGSAA SSYSDDTAAM YDAITLSQQL KYYKEYRSKL AAVAGRRQAR TILAEALYVV STGTGDFIQN YYHNASLSAR YDVDRYCDLL
201: VGIFSGFADE LYRLGARRIG VTTMPPLGCL PATIRLYGGK GRSGGGGCLP RLNRDAETFN RKLNATVGAL VRRHAGLKVA VFDVYTPLRD LSERPAAHGF
301: AEARRTCCRT GKAGTRVYLC DPATSKAARM CRNASSYVYF DGVHPSEAAN LVVAESLVSA GIDLLT
001: MDRCTSSFLL LTLVSTLSIL QISFAQLVPA IMTFGDSVVD VGNNNYLPTL FRADYPPYGR DFANHKATGR FCNGKLATDI TAETLGFTKY PPAYLSPEAS
101: GKNLLIGANF ASAASGYDDK AALLNHAIPL YQQVEYFKEY KSKLIKIAGS KKADSIIKGA ICLLSAGSSD FVQNYYVNPL LYKVYTVDAY GSFLIDNFST
201: FIKQVYAVGA RKIGVTSLPP TGCLPAARTL FGFHEKGCVS RLNTDAQNFN KKLNAAASKL QKQYSDLKIV VFDIYSPLYD LVQNPSKSGF TEATKGCCGT
301: GTVETTSLLC NPKSFGTCSN ATQYVFWDSV HPSEAANEIL ATALIGQGFS LLG
101: GKNLLIGANF ASAASGYDDK AALLNHAIPL YQQVEYFKEY KSKLIKIAGS KKADSIIKGA ICLLSAGSSD FVQNYYVNPL LYKVYTVDAY GSFLIDNFST
201: FIKQVYAVGA RKIGVTSLPP TGCLPAARTL FGFHEKGCVS RLNTDAQNFN KKLNAAASKL QKQYSDLKIV VFDIYSPLYD LVQNPSKSGF TEATKGCCGT
301: GTVETTSLLC NPKSFGTCSN ATQYVFWDSV HPSEAANEIL ATALIGQGFS LLG
Arabidopsis Description
APGGDSL esterase/lipase APG [Source:UniProtKB/Swiss-Prot;Acc:Q9LU14]
SUBAcon: [endoplasmic reticulum,vacuole]
SUBAcon: [endoplasmic reticulum,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.