Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- extracellular 4
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
- plastid 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
TraesCS3A01G099400.1 | |
TraesCS3B01G115800.1 | |
TraesCS3D01G099700.1 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT3G16370.1 | TraesCS3A01G099400.1 | AT2G01950.1 | 19000166 |
AT3G16370.1 | TraesCS3B01G115800.1 | AT2G01950.1 | 19000166 |
AT3G16370.1 | TraesCS3D01G099700.1 | AT2G01950.1 | 19000166 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS4A01G398700.1 | Wheat | extracellular | 77.51 | 73.18 |
HORVU7Hr1G021630.2 | Barley | cytosol, plastid | 55.33 | 69.0 |
TraesCS4A01G398500.1 | Wheat | plasma membrane | 59.47 | 56.94 |
TraesCS7A01G099900.1 | Wheat | extracellular, golgi, plasma membrane | 59.17 | 55.71 |
TraesCS4A01G398600.1 | Wheat | extracellular | 57.4 | 54.96 |
TraesCS4A01G397900.1 | Wheat | extracellular | 57.4 | 54.8 |
Os06t0148200-01 | Rice | extracellular | 56.51 | 54.42 |
EER87840 | Sorghum | extracellular, vacuole | 56.21 | 52.78 |
TraesCS4A01G397000.1 | Wheat | extracellular | 54.73 | 52.71 |
TraesCS7A01G097100.1 | Wheat | golgi | 54.44 | 52.42 |
Zm00001d011661_P001 | Maize | extracellular | 53.55 | 50.7 |
GSMUA_Achr7P08930_001 | Banana | endoplasmic reticulum, extracellular | 50.59 | 47.63 |
GSMUA_Achr2P16800_001 | Banana | extracellular, vacuole | 49.41 | 46.65 |
KRH47190 | Soybean | nucleus | 46.45 | 44.48 |
VIT_09s0002g03140.t01 | Wine grape | extracellular | 46.15 | 43.82 |
AT3G16370.1 | Thale cress | endoplasmic reticulum, vacuole | 45.56 | 43.63 |
CDY30167 | Canola | extracellular | 45.56 | 43.5 |
KRH23361 | Soybean | nucleus | 45.27 | 43.34 |
KRH44252 | Soybean | nucleus | 46.75 | 43.29 |
Bra027168.1-P | Field mustard | extracellular | 45.27 | 43.22 |
PGSC0003DMT400006461 | Potato | extracellular | 45.86 | 43.18 |
Solyc03g121180.2.1 | Tomato | nucleus | 45.56 | 42.9 |
CDY56196 | Canola | vacuole | 45.27 | 42.74 |
PGSC0003DMT400006459 | Potato | extracellular | 45.27 | 42.62 |
TraesCS4A01G285700.1 | Wheat | endoplasmic reticulum, plasma membrane | 43.79 | 41.93 |
KRH09971 | Soybean | nucleus | 41.72 | 41.23 |
VIT_09s0002g03150.t01 | Wine grape | extracellular | 40.24 | 38.31 |
TraesCS4A01G399300.1 | Wheat | endoplasmic reticulum | 40.83 | 38.12 |
TraesCS7A01G100600.1 | Wheat | endoplasmic reticulum, golgi | 40.53 | 37.43 |
Solyc03g121170.2.1 | Tomato | nucleus | 45.27 | 36.69 |
CDX75880 | Canola | vacuole | 23.96 | 26.13 |
Protein Annotations
EnsemblPlants:TraesCS7A01G100200.1 | EnsemblPlantsGene:TraesCS7A01G100200 | Gene3D:3.40.50.1110 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0016787 |
GO:GO:0016788 | InterPro:GDSL | InterPro:IPR036514 | InterPro:SGNH_hydro_sf | InterPro:SGNH_plant_lipase_like | PANTHER:PTHR22835 |
PANTHER:PTHR22835:SF134 | PFAM:PF00657 | SignalP:SignalP-noTM | TIGR:cd01837 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chr7A:+:61569916..61571887
Molecular Weight (calculated)
37318.6 Da
IEP (calculated)
8.115
GRAVY (calculated)
-0.048
Length
338 amino acids
Sequence
(BLAST)
(BLAST)
001: MRCLLLLVVF FVAGPWKHPG EARPLVPAVM LFGDSLVDIG NNDYIQTAAK ANFPPYGRDF QDHIATGRFC NGKVLSNFIG EALGFTGSPV AYLIPEASGE
101: NLLSGANFAS AQSGYYDQTA HMYNVVPLSQ QLEHFKEYRH KLVVQVGSNQ AQSIISDSLY IISAGSNDYL FNYYVNPFIY KSQDQFSDLL IGILNNTVAV
201: LYGMGARRIG VFSLPSFGCA PLAVTVFGHG GNDTCVTRLN NDAMRFNRKL STSVDLLSKR YHDLKIAVLD LYTPLYSLVT SPGSQGFTES RTRGEDAVGQ
301: ERWRLRCFSA ILYRSGLVQT QQHTCSGILS TPQKQQTM
101: NLLSGANFAS AQSGYYDQTA HMYNVVPLSQ QLEHFKEYRH KLVVQVGSNQ AQSIISDSLY IISAGSNDYL FNYYVNPFIY KSQDQFSDLL IGILNNTVAV
201: LYGMGARRIG VFSLPSFGCA PLAVTVFGHG GNDTCVTRLN NDAMRFNRKL STSVDLLSKR YHDLKIAVLD LYTPLYSLVT SPGSQGFTES RTRGEDAVGQ
301: ERWRLRCFSA ILYRSGLVQT QQHTCSGILS TPQKQQTM
001: MDRCTSSFLL LTLVSTLSIL QISFAQLVPA IMTFGDSVVD VGNNNYLPTL FRADYPPYGR DFANHKATGR FCNGKLATDI TAETLGFTKY PPAYLSPEAS
101: GKNLLIGANF ASAASGYDDK AALLNHAIPL YQQVEYFKEY KSKLIKIAGS KKADSIIKGA ICLLSAGSSD FVQNYYVNPL LYKVYTVDAY GSFLIDNFST
201: FIKQVYAVGA RKIGVTSLPP TGCLPAARTL FGFHEKGCVS RLNTDAQNFN KKLNAAASKL QKQYSDLKIV VFDIYSPLYD LVQNPSKSGF TEATKGCCGT
301: GTVETTSLLC NPKSFGTCSN ATQYVFWDSV HPSEAANEIL ATALIGQGFS LLG
101: GKNLLIGANF ASAASGYDDK AALLNHAIPL YQQVEYFKEY KSKLIKIAGS KKADSIIKGA ICLLSAGSSD FVQNYYVNPL LYKVYTVDAY GSFLIDNFST
201: FIKQVYAVGA RKIGVTSLPP TGCLPAARTL FGFHEKGCVS RLNTDAQNFN KKLNAAASKL QKQYSDLKIV VFDIYSPLYD LVQNPSKSGF TEATKGCCGT
301: GTVETTSLLC NPKSFGTCSN ATQYVFWDSV HPSEAANEIL ATALIGQGFS LLG
Arabidopsis Description
APGGDSL esterase/lipase APG [Source:UniProtKB/Swiss-Prot;Acc:Q9LU14]
SUBAcon: [endoplasmic reticulum,vacuole]
SUBAcon: [endoplasmic reticulum,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.