Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 7
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 5
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc04g008430.1.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G16370.1 | Solyc04g008430.1.1 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400006461 | Potato | extracellular | 82.01 | 95.26 |
| Solyc03g121180.2.1 | Tomato | nucleus | 68.82 | 79.94 |
| KRH47190 | Soybean | nucleus | 60.43 | 71.39 |
| VIT_09s0002g03140.t01 | Wine grape | extracellular | 59.47 | 69.66 |
| KRH44252 | Soybean | nucleus | 60.67 | 69.32 |
| KRH23361 | Soybean | nucleus | 58.51 | 69.12 |
| KRH09971 | Soybean | nucleus | 55.4 | 67.54 |
| AT3G16370.1 | Thale cress | endoplasmic reticulum, vacuole | 54.68 | 64.59 |
| Bra027168.1-P | Field mustard | extracellular | 54.2 | 63.84 |
| CDY56196 | Canola | vacuole | 54.44 | 63.41 |
| CDY30167 | Canola | extracellular | 53.72 | 63.28 |
| GSMUA_Achr7P08930_001 | Banana | endoplasmic reticulum, extracellular | 54.2 | 62.95 |
| Os06t0148200-01 | Rice | extracellular | 51.8 | 61.54 |
| EER87840 | Sorghum | extracellular, vacuole | 52.28 | 60.56 |
| Zm00001d011661_P001 | Maize | extracellular | 51.8 | 60.5 |
| GSMUA_Achr2P16800_001 | Banana | extracellular, vacuole | 51.8 | 60.34 |
| VIT_09s0002g03150.t01 | Wine grape | extracellular | 50.84 | 59.72 |
| TraesCS7D01G093200.1 | Wheat | extracellular | 48.92 | 58.12 |
| TraesCS4A01G397000.1 | Wheat | extracellular | 48.92 | 58.12 |
| TraesCS7A01G097100.1 | Wheat | golgi | 48.92 | 58.12 |
| Solyc11g066700.1.1 | Tomato | extracellular, plasma membrane | 46.04 | 54.08 |
| Solyc10g085740.1.1 | Tomato | extracellular | 43.88 | 52.59 |
| HORVU7Hr1G021310.7 | Barley | extracellular | 49.4 | 52.28 |
| HORVU7Hr1G021630.2 | Barley | cytosol, plastid | 33.57 | 51.66 |
| TraesCS4A01G398700.1 | Wheat | extracellular | 44.12 | 51.4 |
| TraesCS7D01G094500.1 | Wheat | extracellular | 42.69 | 50.42 |
| EER87852 | Sorghum | extracellular | 43.65 | 50.42 |
| TraesCS7D01G094000.1 | Wheat | extracellular | 42.21 | 50.14 |
| HORVU7Hr1G021580.1 | Barley | extracellular | 42.45 | 50.14 |
| TraesCS7D01G094900.1 | Wheat | endoplasmic reticulum, golgi | 43.41 | 50.0 |
| TraesCS4A01G397900.1 | Wheat | extracellular | 42.45 | 50.0 |
| TraesCS4A01G399300.1 | Wheat | endoplasmic reticulum | 43.41 | 50.0 |
| HORVU7Hr1G021620.2 | Barley | endoplasmic reticulum, golgi, mitochondrion | 43.88 | 49.73 |
| TraesCS7A01G100600.1 | Wheat | endoplasmic reticulum, golgi | 43.41 | 49.45 |
| HORVU7Hr1G021460.4 | Barley | extracellular | 41.73 | 49.43 |
| TraesCS4A01G398500.1 | Wheat | plasma membrane | 41.73 | 49.29 |
| Zm00001d036175_P001 | Maize | endoplasmic reticulum, extracellular, vacuole | 42.21 | 49.03 |
| HORVU2Hr1G002340.1 | Barley | cytosol, plastid | 30.22 | 48.84 |
| TraesCS7A01G099900.1 | Wheat | extracellular, golgi, plasma membrane | 41.73 | 48.47 |
| TraesCS4A01G398600.1 | Wheat | extracellular | 41.01 | 48.44 |
| Solyc09g008690.1.1 | Tomato | extracellular | 27.1 | 48.29 |
| TraesCS3D01G431500.1 | Wheat | endoplasmic reticulum, golgi | 43.41 | 45.82 |
| TraesCS7A01G100200.1 | Wheat | extracellular | 36.69 | 45.27 |
| HORVU0Hr1G019420.1 | Barley | endoplasmic reticulum, mitochondrion | 23.26 | 41.81 |
| Os06t0149100-01 | Rice | cytosol | 16.31 | 41.46 |
| Solyc05g043310.1.1 | Tomato | extracellular | 11.99 | 37.59 |
| CDX75880 | Canola | vacuole | 27.82 | 37.42 |
Protein Annotations
| EnsemblPlants:Solyc03g121170.2.1 | EnsemblPlantsGene:Solyc03g121170.2 | Gene3D:3.40.50.1110 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0016787 |
| GO:GO:0016788 | InterPro:GDSL | InterPro:IPR036514 | InterPro:SGNH_hydro_sf | InterPro:SGNH_plant_lipase_like | PANTHER:PTHR22835 |
| PANTHER:PTHR22835:SF134 | PFAM:PF00657 | SEG:seg | SignalP:SignalP-noTM | SUPFAM:SSF52266 | UniParc:UPI0002767136 |
| UniProt:K4BMR6 | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chr3:-:69355493..69357961
Molecular Weight (calculated)
45978.8 Da
IEP (calculated)
9.033
GRAVY (calculated)
0.089
Length
417 amino acids
Sequence
(BLAST)
(BLAST)
001: MRTWASVACA PLLFQVPCIE CRIVHPLIID VIRLATYCDH YIVFKCLANT HCTIPFWRMG IYNNRPALLL LLVALLGSAI RLSSAQESTT LVPAIITFGD
101: SASDVGNNDY IITLFKANYP PYGRDFVTHQ PTGRFCNGKL VTDMTADALG FTTYPAAYLS PEASGKNLLI GTNFASAAAG YDDKTAILNH AIPLSKQMQY
201: YKEYKSKLVK VAGSQKAESI LKDALYILSA GTADFLQNYY FNPYLNKIST PRQYSSYLVR IFTHFVKDLY GQGARRIGVT SLPPLGCLPA AKTMFGFHKS
301: GCISKINRDA KQFNKKMNST AAQLRKQLPG LKIAIFDVFQ PMYDLVNYPS DHGFVVANRG CCGTGKVETT SLFCNPKLAG TCSNATEYVF WDGIHLSEAA
401: NKVLADTLIM QGIYLLG
101: SASDVGNNDY IITLFKANYP PYGRDFVTHQ PTGRFCNGKL VTDMTADALG FTTYPAAYLS PEASGKNLLI GTNFASAAAG YDDKTAILNH AIPLSKQMQY
201: YKEYKSKLVK VAGSQKAESI LKDALYILSA GTADFLQNYY FNPYLNKIST PRQYSSYLVR IFTHFVKDLY GQGARRIGVT SLPPLGCLPA AKTMFGFHKS
301: GCISKINRDA KQFNKKMNST AAQLRKQLPG LKIAIFDVFQ PMYDLVNYPS DHGFVVANRG CCGTGKVETT SLFCNPKLAG TCSNATEYVF WDGIHLSEAA
401: NKVLADTLIM QGIYLLG
001: MDRCTSSFLL LTLVSTLSIL QISFAQLVPA IMTFGDSVVD VGNNNYLPTL FRADYPPYGR DFANHKATGR FCNGKLATDI TAETLGFTKY PPAYLSPEAS
101: GKNLLIGANF ASAASGYDDK AALLNHAIPL YQQVEYFKEY KSKLIKIAGS KKADSIIKGA ICLLSAGSSD FVQNYYVNPL LYKVYTVDAY GSFLIDNFST
201: FIKQVYAVGA RKIGVTSLPP TGCLPAARTL FGFHEKGCVS RLNTDAQNFN KKLNAAASKL QKQYSDLKIV VFDIYSPLYD LVQNPSKSGF TEATKGCCGT
301: GTVETTSLLC NPKSFGTCSN ATQYVFWDSV HPSEAANEIL ATALIGQGFS LLG
101: GKNLLIGANF ASAASGYDDK AALLNHAIPL YQQVEYFKEY KSKLIKIAGS KKADSIIKGA ICLLSAGSSD FVQNYYVNPL LYKVYTVDAY GSFLIDNFST
201: FIKQVYAVGA RKIGVTSLPP TGCLPAARTL FGFHEKGCVS RLNTDAQNFN KKLNAAASKL QKQYSDLKIV VFDIYSPLYD LVQNPSKSGF TEATKGCCGT
301: GTVETTSLLC NPKSFGTCSN ATQYVFWDSV HPSEAANEIL ATALIGQGFS LLG
Arabidopsis Description
APGGDSL esterase/lipase APG [Source:UniProtKB/Swiss-Prot;Acc:Q9LU14]
SUBAcon: [endoplasmic reticulum,vacuole]
SUBAcon: [endoplasmic reticulum,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.