Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU3Hr1G018030.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G16370.1 | HORVU3Hr1G018030.1 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G094500.1 | Wheat | extracellular | 81.78 | 59.77 |
| TraesCS4A01G398500.1 | Wheat | plasma membrane | 81.01 | 59.21 |
| TraesCS7A01G099900.1 | Wheat | extracellular, golgi, plasma membrane | 79.07 | 56.82 |
| HORVU7Hr1G021630.2 | Barley | cytosol, plastid | 54.65 | 52.03 |
| Os06t0148200-01 | Rice | extracellular | 63.95 | 47.01 |
| HORVU7Hr1G021460.4 | Barley | extracellular | 63.95 | 46.88 |
| HORVU7Hr1G021580.1 | Barley | extracellular | 61.24 | 44.76 |
| EER87840 | Sorghum | extracellular, vacuole | 62.02 | 44.44 |
| Zm00001d011661_P001 | Maize | extracellular | 60.47 | 43.7 |
| GSMUA_Achr2P16800_001 | Banana | extracellular, vacuole | 56.59 | 40.78 |
| GSMUA_Achr7P08930_001 | Banana | endoplasmic reticulum, extracellular | 56.59 | 40.67 |
| HORVU7Hr1G021310.7 | Barley | extracellular | 62.02 | 40.61 |
| VIT_09s0002g03140.t01 | Wine grape | extracellular | 53.49 | 38.76 |
| KRH47190 | Soybean | nucleus | 51.94 | 37.96 |
| Bra027168.1-P | Field mustard | extracellular | 51.94 | 37.85 |
| CDY30167 | Canola | extracellular | 51.55 | 37.57 |
| CDY56196 | Canola | vacuole | 51.94 | 37.43 |
| Solyc03g121180.2.1 | Tomato | nucleus | 51.94 | 37.33 |
| AT3G16370.1 | Thale cress | endoplasmic reticulum, vacuole | 50.78 | 37.11 |
| PGSC0003DMT400006459 | Potato | extracellular | 51.55 | 37.05 |
| KRH44252 | Soybean | nucleus | 52.33 | 36.99 |
| HORVU7Hr1G021620.2 | Barley | endoplasmic reticulum, golgi, mitochondrion | 52.33 | 36.68 |
| KRH23361 | Soybean | nucleus | 49.61 | 36.26 |
| PGSC0003DMT400006461 | Potato | extracellular | 50.0 | 35.93 |
| KRH09971 | Soybean | nucleus | 46.12 | 34.8 |
| HORVU4Hr1G004100.1 | Barley | endoplasmic reticulum, plasma membrane | 48.84 | 34.33 |
| VIT_09s0002g03150.t01 | Wine grape | extracellular | 46.9 | 34.08 |
| HORVU0Hr1G019420.1 | Barley | endoplasmic reticulum, mitochondrion | 30.23 | 33.62 |
| Solyc03g121170.2.1 | Tomato | nucleus | 48.84 | 30.22 |
| HORVU3Hr1G089960.1 | Barley | plastid | 16.67 | 20.98 |
| CDX75880 | Canola | vacuole | 22.09 | 18.39 |
| HORVU1Hr1G065930.2 | Barley | mitochondrion | 15.5 | 10.05 |
Protein Annotations
| EnsemblPlants:HORVU2Hr1G002340.1 | EnsemblPlantsGene:HORVU2Hr1G002340 | Gene3D:3.40.50.1110 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0016787 |
| GO:GO:0016788 | InterPro:GDSL | InterPro:IPR036514 | InterPro:SGNH_hydro_sf | InterPro:SGNH_plant_lipase_like | PANTHER:PTHR22835 |
| PANTHER:PTHR22835:SF134 | PFAM:PF00657 | UniParc:UPI000B468F22 | UniProt:A0A287GWK9 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chrchr2H:+:4700881..4702187
Molecular Weight (calculated)
28189.3 Da
IEP (calculated)
8.185
GRAVY (calculated)
-0.076
Length
258 amino acids
Sequence
(BLAST)
(BLAST)
001: DSLLSIGSNN YIKTVVKANV APYGRDFKDH VATGRFSNGK VLSDFIGEKL GFDGSPPAYL SPEASRLNLL IGANFASAGS GYYDDTARIY HVTPLSQQLD
101: YFKEYQSKLA VVAGSNQVQT IISDSLYIIS AASNDFGFNY YINPLLFLRE NTDQFGDRLI HIFNNTVTQL YTLGARRVGV FSIAPLGCAP LAITVFGLGR
201: SGCVPSLDDD ARRFNRKLGA AVDSLSTRYH DLKIAVLDIY TPWHSLATSP GSHGKIDR
101: YFKEYQSKLA VVAGSNQVQT IISDSLYIIS AASNDFGFNY YINPLLFLRE NTDQFGDRLI HIFNNTVTQL YTLGARRVGV FSIAPLGCAP LAITVFGLGR
201: SGCVPSLDDD ARRFNRKLGA AVDSLSTRYH DLKIAVLDIY TPWHSLATSP GSHGKIDR
001: MDRCTSSFLL LTLVSTLSIL QISFAQLVPA IMTFGDSVVD VGNNNYLPTL FRADYPPYGR DFANHKATGR FCNGKLATDI TAETLGFTKY PPAYLSPEAS
101: GKNLLIGANF ASAASGYDDK AALLNHAIPL YQQVEYFKEY KSKLIKIAGS KKADSIIKGA ICLLSAGSSD FVQNYYVNPL LYKVYTVDAY GSFLIDNFST
201: FIKQVYAVGA RKIGVTSLPP TGCLPAARTL FGFHEKGCVS RLNTDAQNFN KKLNAAASKL QKQYSDLKIV VFDIYSPLYD LVQNPSKSGF TEATKGCCGT
301: GTVETTSLLC NPKSFGTCSN ATQYVFWDSV HPSEAANEIL ATALIGQGFS LLG
101: GKNLLIGANF ASAASGYDDK AALLNHAIPL YQQVEYFKEY KSKLIKIAGS KKADSIIKGA ICLLSAGSSD FVQNYYVNPL LYKVYTVDAY GSFLIDNFST
201: FIKQVYAVGA RKIGVTSLPP TGCLPAARTL FGFHEKGCVS RLNTDAQNFN KKLNAAASKL QKQYSDLKIV VFDIYSPLYD LVQNPSKSGF TEATKGCCGT
301: GTVETTSLLC NPKSFGTCSN ATQYVFWDSV HPSEAANEIL ATALIGQGFS LLG
Arabidopsis Description
APGGDSL esterase/lipase APG [Source:UniProtKB/Swiss-Prot;Acc:Q9LU14]
SUBAcon: [endoplasmic reticulum,vacuole]
SUBAcon: [endoplasmic reticulum,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.