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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • extracellular 5
  • endoplasmic reticulum 7
  • vacuole 6
  • plasma membrane 5
  • golgi 5
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:secretory
BaCelLo:secretory
iPSORT:secretory
MultiLoc:endoplasmic reticulum
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:endoplasmic reticulum
YLoc:vacuole
 nucleus: 21132161
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
PPI

Inferred distinct locusB in Crop

locusBlocations
KRH42483
KRH58580

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G16370.1 KRH42483 AT2G01950.1 19000166
AT3G16370.1 KRH58580 AT2G01950.1 19000166
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH23361 Soybean nucleus 91.81 88.95
KRH47190 Soybean nucleus 80.99 78.47
KRH44252 Soybean nucleus 80.41 75.34
VIT_09s0002g03140.t01 Wine grape extracellular 74.85 71.91
Solyc03g121180.2.1 Tomato nucleus 73.68 70.19
PGSC0003DMT400006459 Potato extracellular 73.68 70.19
AT3G16370.1 Thale cress endoplasmic reticulum, vacuole 69.88 67.71
Bra027168.1-P Field mustard extracellular 69.59 67.23
CDY30167 Canola extracellular 69.59 67.23
CDY56196 Canola vacuole 69.88 66.76
PGSC0003DMT400006461 Potato extracellular 68.13 64.9
Os06t0148200-01 Rice extracellular 64.33 62.68
GSMUA_Achr7P08930_001 Banana endoplasmic reticulum, extracellular 65.79 62.67
GSMUA_Achr2P16800_001 Banana extracellular, vacuole 64.04 61.17
TraesCS4A01G397000.1 Wheat extracellular 60.82 59.26
TraesCS7D01G093200.1 Wheat extracellular 60.82 59.26
EER87840 Sorghum extracellular, vacuole 62.28 59.17
TraesCS7A01G097100.1 Wheat golgi 60.53 58.97
Zm00001d011661_P001 Maize extracellular 61.11 58.54
VIT_09s0002g03150.t01 Wine grape extracellular 60.53 58.31
Solyc03g121170.2.1 Tomato nucleus 67.54 55.4
KRH26558 Soybean endoplasmic reticulum, extracellular, vacuole 56.14 54.86
KRH30531 Soybean extracellular, vacuole 56.43 54.67
HORVU7Hr1G021310.7 Barley extracellular 61.11 53.05
KRH25150 Soybean extracellular 47.37 52.94
HORVU7Hr1G021580.1 Barley extracellular 52.34 50.71
HORVU7Hr1G021460.4 Barley extracellular 51.75 50.28
TraesCS7D01G094000.1 Wheat extracellular 51.17 49.86
HORVU7Hr1G021630.2 Barley cytosol, plastid 39.47 49.82
TraesCS4A01G397900.1 Wheat extracellular 51.17 49.44
TraesCS4A01G398700.1 Wheat extracellular 51.17 48.88
TraesCS7D01G094500.1 Wheat extracellular 50.0 48.44
TraesCS4A01G398600.1 Wheat extracellular 49.71 48.16
TraesCS7A01G099900.1 Wheat extracellular, golgi, plasma membrane 50.29 47.91
TraesCS4A01G398500.1 Wheat plasma membrane 49.42 47.88
Zm00001d036175_P001 Maize endoplasmic reticulum, extracellular, vacuole 49.71 47.35
TraesCS4A01G399300.1 Wheat endoplasmic reticulum 50.0 47.24
EER87852 Sorghum extracellular 49.71 47.09
TraesCS7D01G094900.1 Wheat endoplasmic reticulum, golgi 49.42 46.69
HORVU7Hr1G021620.2 Barley endoplasmic reticulum, golgi, mitochondrion 50.0 46.47
TraesCS7A01G100600.1 Wheat endoplasmic reticulum, golgi 49.42 46.17
HORVU2Hr1G002340.1 Barley cytosol, plastid 34.8 46.12
KRH22747 Soybean mitochondrion 57.31 46.12
TraesCS3D01G431500.1 Wheat endoplasmic reticulum, golgi 50.29 43.54
Os06t0149100-01 Rice cytosol 20.18 42.07
TraesCS7A01G100200.1 Wheat extracellular 41.23 41.72
CDX75880 Canola vacuole 37.13 40.97
HORVU0Hr1G019420.1 Barley endoplasmic reticulum, mitochondrion 26.61 39.22
KRG89977 Soybean cytosol 14.33 39.2
KRH61021 Soybean mitochondrion 17.25 36.88
KRH17464 Soybean extracellular 36.55 34.06
KRH05981 Soybean extracellular 35.38 33.06
KRH72762 Soybean cytosol 15.5 30.11
Protein Annotations
EMBL:ACUP02009115EnsemblPlants:KRH09971EnsemblPlantsGene:GLYMA_15G021200Gene3D:3.40.50.1110GO:GO:0003674GO:GO:0003824
GO:GO:0016787GO:GO:0016788InterPro:GDSLInterPro:IPR036514InterPro:SGNH_hydro_sfInterPro:SGNH_plant_lipase_like
PANTHER:PTHR22835PANTHER:PTHR22835:SF134PFAM:PF00657ProteinID:KRH09971ProteinID:KRH09971.1SEG:seg
SignalP:SignalP-noTMSUPFAM:SSF52266UniParc:UPI0006EDEC8DUniProt:A0A0R0G2Z5MapMan:35.1:
Description
hypothetical protein
Coordinates
chr15:-:1633562..1635026
Molecular Weight (calculated)
36851.1 Da
IEP (calculated)
8.571
GRAVY (calculated)
0.083
Length
342 amino acids
Sequence
(BLAST)
001: MTINSTEALL VLLAFVFLAW GNAQNTLVPA IITFGDSAVD IGNNDYLPTL FKANYPPYGR DFSNHQPTGR FCNGKLATDI TAETLGFKSF APAYLSPQAS
101: GKNLLIGGNF ASAASGNDEK AAILNHAIPL SQQLKYYKEY QGKLAKNALY ILSAGSSDFV QNYYVNPLIN KVFTPDHYSA YLVGAFSSFV KVCCYCYSTN
201: YCLSGARKIG VTSLPPLGCL PAARTLFGFH EKGCASRINN DTQGFNKKIK SAAANLQKQL PGLKIVVFDT FKPLYDLVQS PSKFGCCGTG IVETTSLLCN
301: PKSLGTCSNA TQYVFWDSVH PSQAANQVLA DALILQGIAL IT
Best Arabidopsis Sequence Match ( AT3G16370.1 )
(BLAST)
001: MDRCTSSFLL LTLVSTLSIL QISFAQLVPA IMTFGDSVVD VGNNNYLPTL FRADYPPYGR DFANHKATGR FCNGKLATDI TAETLGFTKY PPAYLSPEAS
101: GKNLLIGANF ASAASGYDDK AALLNHAIPL YQQVEYFKEY KSKLIKIAGS KKADSIIKGA ICLLSAGSSD FVQNYYVNPL LYKVYTVDAY GSFLIDNFST
201: FIKQVYAVGA RKIGVTSLPP TGCLPAARTL FGFHEKGCVS RLNTDAQNFN KKLNAAASKL QKQYSDLKIV VFDIYSPLYD LVQNPSKSGF TEATKGCCGT
301: GTVETTSLLC NPKSFGTCSN ATQYVFWDSV HPSEAANEIL ATALIGQGFS LLG
Arabidopsis Description
APGGDSL esterase/lipase APG [Source:UniProtKB/Swiss-Prot;Acc:Q9LU14]
SUBAcon: [endoplasmic reticulum,vacuole]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.