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Potato
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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • extracellular 8
  • endoplasmic reticulum 5
  • vacuole 6
  • plasma membrane 5
  • golgi 5
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:secretory
BaCelLo:secretory
iPSORT:secretory
MultiLoc:extracellular
Plant-mPloc:extracellular
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:extracellular
YLoc:vacuole
PPI

Inferred distinct locusB in Crop

locusBlocations
PGSC0003DMT400075691

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G16370.1 PGSC0003DMT400075691 AT2G01950.1 19000166
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc03g121180.2.1 Tomato nucleus 96.66 96.66
PGSC0003DMT400006461 Potato extracellular 80.22 80.22
KRH47190 Soybean nucleus 77.44 78.75
VIT_09s0002g03140.t01 Wine grape extracellular 77.16 77.81
KRH23361 Soybean nucleus 74.93 76.2
KRH44252 Soybean nucleus 77.16 75.89
KRH09971 Soybean nucleus 70.19 73.68
Bra027168.1-P Field mustard extracellular 67.97 68.93
AT3G16370.1 Thale cress endoplasmic reticulum, vacuole 67.69 68.84
CDY56196 Canola vacuole 68.25 68.44
CDY30167 Canola extracellular 67.13 68.08
GSMUA_Achr7P08930_001 Banana endoplasmic reticulum, extracellular 67.69 67.69
Os06t0148200-01 Rice extracellular 65.46 66.95
GSMUA_Achr2P16800_001 Banana extracellular, vacuole 65.74 65.92
EER87840 Sorghum extracellular, vacuole 64.9 64.72
Zm00001d011661_P001 Maize extracellular 64.35 64.71
TraesCS4A01G397000.1 Wheat extracellular 62.4 63.82
TraesCS7D01G093200.1 Wheat extracellular 62.12 63.53
TraesCS7A01G097100.1 Wheat golgi 61.84 63.25
VIT_09s0002g03150.t01 Wine grape extracellular 62.12 62.82
PGSC0003DMT400088508 Potato extracellular 25.91 58.49
HORVU7Hr1G021310.7 Barley extracellular 62.67 57.11
HORVU7Hr1G021630.2 Barley cytosol, plastid 42.62 56.46
PGSC0003DMT400021670 Potato extracellular 54.32 56.03
PGSC0003DMT400001233 Potato extracellular, plasma membrane 54.6 55.52
TraesCS4A01G398500.1 Wheat plasma membrane 53.48 54.39
TraesCS7D01G094500.1 Wheat extracellular 52.92 53.82
TraesCS7D01G094000.1 Wheat extracellular 52.09 53.28
HORVU7Hr1G021580.1 Barley extracellular 52.09 52.97
TraesCS4A01G397900.1 Wheat extracellular 51.81 52.54
TraesCS7A01G099900.1 Wheat extracellular, golgi, plasma membrane 52.37 52.37
TraesCS4A01G398700.1 Wheat extracellular 52.09 52.23
HORVU7Hr1G021460.4 Barley extracellular 50.97 51.99
HORVU2Hr1G002340.1 Barley cytosol, plastid 37.05 51.55
TraesCS4A01G398600.1 Wheat extracellular 50.42 51.27
EER87852 Sorghum extracellular 50.97 50.69
TraesCS4A01G399300.1 Wheat endoplasmic reticulum 50.97 50.55
Zm00001d036175_P001 Maize endoplasmic reticulum, extracellular, vacuole 50.42 50.42
TraesCS7D01G094900.1 Wheat endoplasmic reticulum, golgi 50.14 49.72
TraesCS7A01G100600.1 Wheat endoplasmic reticulum, golgi 50.42 49.45
HORVU7Hr1G021620.2 Barley endoplasmic reticulum, golgi, mitochondrion 50.42 49.18
PGSC0003DMT400033798 Potato extracellular 31.75 48.72
TraesCS3D01G431500.1 Wheat endoplasmic reticulum, golgi 50.7 46.08
TraesCS7A01G100200.1 Wheat extracellular 42.62 45.27
PGSC0003DMT400076811 Potato cytosol 24.79 41.98
Os06t0149100-01 Rice cytosol 18.94 41.46
CDX75880 Canola vacuole 35.65 41.29
HORVU0Hr1G019420.1 Barley endoplasmic reticulum, mitochondrion 25.91 40.09
PGSC0003DMT400027844 Potato extracellular 14.76 35.57
PGSC0003DMT400020220 Potato cytosol 23.96 26.54
Protein Annotations
EntrezGene:102601783Gene3D:3.40.50.1110MapMan:35.1ncoils:CoilInterPro:GDSLGO:GO:0003674
GO:GO:0003824GO:GO:0016787GO:GO:0016788InterPro:IPR036514UniProt:M0ZRD6PFAM:PF00657
EnsemblPlantsGene:PGSC0003DMG400002519PGSC:PGSC0003DMG400002519EnsemblPlants:PGSC0003DMT400006459PANTHER:PTHR22835PANTHER:PTHR22835:SF134InterPro:SGNH_hydro_sf
InterPro:SGNH_plant_lipase_likeSUPFAM:SSF52266SignalP:SignalP-noTMUniParc:UPI000295D886RefSeq:XP_006343026.1SEG:seg
Description
Zinc finger protein [Source:PGSC_GENE;Acc:PGSC0003DMG400002519]
Coordinates
chr3:-:60497040..60499222
Molecular Weight (calculated)
38996.3 Da
IEP (calculated)
7.765
GRAVY (calculated)
-0.045
Length
359 amino acids
Sequence
(BLAST)
001: MSIHRQQILA FFFVALLGFI DIRLNNAQDS TTLVPAIITF GDSAVDVGNN DYIHTLFKAN YPPYGRDFVT RQPTGRFCNG KLATDITADT LGFTTYPAAY
101: LSPEASGKNL LIGTNFASAA AGFDDKTAIL NHAIPFSTQM QYYKEYQSKL AKVAGSQKAA SILKDALYII SAGSSDFLQN YYLNPYLNKL YTPDQYGSYL
201: VGIFTSSVKD LYGQGARRIG VTSLPPLGCL PAARTLFGFH ESGCVSRINS DAQQFNKKMN SAAAQLQKQL PELKIAIFDI FQPLYDLVKS PSDHGFAEAN
301: RGCCGTGTVE TTSLLCNPKS PGTCSNATQY VFWDSVHPSQ AANQVLADSL IIQGINLIG
Best Arabidopsis Sequence Match ( AT3G16370.1 )
(BLAST)
001: MDRCTSSFLL LTLVSTLSIL QISFAQLVPA IMTFGDSVVD VGNNNYLPTL FRADYPPYGR DFANHKATGR FCNGKLATDI TAETLGFTKY PPAYLSPEAS
101: GKNLLIGANF ASAASGYDDK AALLNHAIPL YQQVEYFKEY KSKLIKIAGS KKADSIIKGA ICLLSAGSSD FVQNYYVNPL LYKVYTVDAY GSFLIDNFST
201: FIKQVYAVGA RKIGVTSLPP TGCLPAARTL FGFHEKGCVS RLNTDAQNFN KKLNAAASKL QKQYSDLKIV VFDIYSPLYD LVQNPSKSGF TEATKGCCGT
301: GTVETTSLLC NPKSFGTCSN ATQYVFWDSV HPSEAANEIL ATALIGQGFS LLG
Arabidopsis Description
APGGDSL esterase/lipase APG [Source:UniProtKB/Swiss-Prot;Acc:Q9LU14]
SUBAcon: [endoplasmic reticulum,vacuole]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.