Subcellular Localization
min:
: max
Winner_takes_all: vacuole
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 1
- vacuole 3
- extracellular 2
- endoplasmic reticulum 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G16370.1 | CDY03088 | AT2G01950.1 | 19000166 |
| AT3G16370.1 | CDY17621 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G16370.1 | Thale cress | endoplasmic reticulum, vacuole | 51.61 | 45.33 |
| CDY30167 | Canola | extracellular | 51.61 | 45.2 |
| CDY56196 | Canola | vacuole | 51.94 | 44.97 |
| KRH23361 | Soybean | nucleus | 43.55 | 38.24 |
| KRH47190 | Soybean | nucleus | 42.58 | 37.39 |
| KRH09971 | Soybean | nucleus | 40.97 | 37.13 |
| VIT_09s0002g03140.t01 | Wine grape | extracellular | 41.61 | 36.24 |
| KRH44252 | Soybean | nucleus | 42.26 | 35.89 |
| Solyc03g121180.2.1 | Tomato | nucleus | 41.29 | 35.65 |
| PGSC0003DMT400006459 | Potato | extracellular | 41.29 | 35.65 |
| Os06t0148200-01 | Rice | extracellular | 40.0 | 35.33 |
| EER87840 | Sorghum | extracellular, vacuole | 39.68 | 34.17 |
| TraesCS7D01G093200.1 | Wheat | extracellular | 38.39 | 33.9 |
| TraesCS4A01G397000.1 | Wheat | extracellular | 38.39 | 33.9 |
| GSMUA_Achr7P08930_001 | Banana | endoplasmic reticulum, extracellular | 38.71 | 33.43 |
| TraesCS7A01G097100.1 | Wheat | golgi | 37.74 | 33.33 |
| Zm00001d011661_P001 | Maize | extracellular | 38.06 | 33.05 |
| PGSC0003DMT400006461 | Potato | extracellular | 37.1 | 32.03 |
| GSMUA_Achr2P16800_001 | Banana | extracellular, vacuole | 36.77 | 31.84 |
| CDY14175 | Canola | extracellular, plasma membrane | 33.55 | 31.8 |
| HORVU7Hr1G021310.7 | Barley | extracellular | 38.39 | 30.2 |
| TraesCS7D01G094000.1 | Wheat | extracellular | 33.87 | 29.91 |
| TraesCS4A01G397900.1 | Wheat | extracellular | 33.87 | 29.66 |
| CDX80889 | Canola | extracellular, plasma membrane | 33.55 | 29.46 |
| CDY04898 | Canola | extracellular, plasma membrane | 33.23 | 29.43 |
| VIT_09s0002g03150.t01 | Wine grape | extracellular | 33.55 | 29.3 |
| CDX95394 | Canola | extracellular | 32.9 | 29.06 |
| CDX76226 | Canola | extracellular, plasma membrane | 32.9 | 29.06 |
| CDY39070 | Canola | extracellular | 13.87 | 29.05 |
| CDX85927 | Canola | extracellular, mitochondrion, plastid | 12.9 | 28.99 |
| HORVU7Hr1G021460.4 | Barley | extracellular | 32.58 | 28.69 |
| HORVU7Hr1G021580.1 | Barley | extracellular | 32.58 | 28.61 |
| Zm00001d036175_P001 | Maize | endoplasmic reticulum, extracellular, vacuole | 32.58 | 28.13 |
| TraesCS4A01G398600.1 | Wheat | extracellular | 31.94 | 28.05 |
| CDY09169 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 32.58 | 27.98 |
| Solyc03g121170.2.1 | Tomato | nucleus | 37.42 | 27.82 |
| CDY50286 | Canola | extracellular | 32.26 | 27.78 |
| TraesCS4A01G398500.1 | Wheat | plasma membrane | 30.97 | 27.2 |
| TraesCS4A01G399300.1 | Wheat | endoplasmic reticulum | 31.61 | 27.07 |
| CDY11271 | Canola | extracellular, plasma membrane | 31.94 | 26.98 |
| EER87852 | Sorghum | extracellular | 31.29 | 26.87 |
| TraesCS4A01G398700.1 | Wheat | extracellular | 30.97 | 26.82 |
| TraesCS7A01G100600.1 | Wheat | endoplasmic reticulum, golgi | 31.61 | 26.78 |
| HORVU7Hr1G021620.2 | Barley | endoplasmic reticulum, golgi, mitochondrion | 31.61 | 26.63 |
| TraesCS7D01G094500.1 | Wheat | extracellular | 30.32 | 26.63 |
| TraesCS7D01G094900.1 | Wheat | endoplasmic reticulum, golgi | 30.97 | 26.52 |
| TraesCS7A01G099900.1 | Wheat | extracellular, golgi, plasma membrane | 30.65 | 26.46 |
| CDY15394 | Canola | extracellular | 10.32 | 26.23 |
| HORVU7Hr1G021630.2 | Barley | cytosol, plastid | 21.94 | 25.09 |
| TraesCS3D01G431500.1 | Wheat | endoplasmic reticulum, golgi | 31.94 | 25.06 |
| TraesCS7A01G100200.1 | Wheat | extracellular | 26.13 | 23.96 |
| HORVU2Hr1G002340.1 | Barley | cytosol, plastid | 18.39 | 22.09 |
| CDY30744 | Canola | extracellular | 23.87 | 21.89 |
| CDY45740 | Canola | plasma membrane | 23.87 | 21.89 |
| CDY43409 | Canola | extracellular, plasma membrane | 22.9 | 20.88 |
| CDY44153 | Canola | cytosol | 23.23 | 20.45 |
| CDY54289 | Canola | extracellular | 22.58 | 20.35 |
| CDY13524 | Canola | extracellular, plasma membrane | 22.26 | 20.23 |
| CDY67584 | Canola | extracellular, plasma membrane | 22.26 | 20.23 |
| CDY39069 | Canola | extracellular, plasma membrane | 22.26 | 20.23 |
| CDY25788 | Canola | extracellular | 21.94 | 19.94 |
| CDY04705 | Canola | cytosol, mitochondrion, plasma membrane, plastid | 22.58 | 19.72 |
| CDX96486 | Canola | extracellular, plasma membrane | 21.29 | 19.47 |
| CDY45771 | Canola | extracellular, plasma membrane | 21.29 | 19.35 |
| CDY15393 | Canola | cytosol | 13.55 | 19.09 |
| CDX72994 | Canola | extracellular | 20.65 | 18.88 |
| CDY67583 | Canola | extracellular | 20.32 | 18.37 |
| CDY13523 | Canola | golgi, plasma membrane, plastid | 18.06 | 16.14 |
| CDX89030 | Canola | plasma membrane | 15.48 | 16.0 |
| CDY57589 | Canola | plasma membrane | 22.58 | 14.99 |
| HORVU0Hr1G019420.1 | Barley | endoplasmic reticulum, mitochondrion | 10.97 | 14.66 |
| CDY54290 | Canola | extracellular | 12.58 | 12.96 |
| Os06t0149100-01 | Rice | cytosol | 3.23 | 6.1 |
Protein Annotations
| EnsemblPlants:CDX75880 | EnsemblPlantsGene:GSBRNA2T00123866001 | Gene3D:3.40.50.1110 | GO:A0A078CG93 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0016787 | GO:GO:0016788 | InterPro:GDSL | InterPro:IPR036514 | InterPro:SGNH_hydro_sf | PANTHER:PTHR22835 |
| PANTHER:PTHR22835:SF134 | PFAM:PF00657 | ProteinID:CDX75880 | ProteinID:CDX75880.1 | SEG:seg | UniParc:UPI0004EDD65D |
| MapMan:35.1 | : | : | : | : | : |
Description
BnaC03g39630D
Coordinates
chrLK031805:+:1487505..1488905
Molecular Weight (calculated)
34691.9 Da
IEP (calculated)
8.088
GRAVY (calculated)
0.108
Length
310 amino acids
Sequence
(BLAST)
(BLAST)
001: MNFYSLFYSF FHSSSGHQSE PLFCPELLYC LALFKEDRIA LSHFDLFMAF SFLPHKENGP SQEVVLLLLL VSTFSIFQIL FAQGAPTTLI PPIITFGNSV
101: VNVGKNNYLS ALLRAEYPTY GREFANLKST ARFCKGKLVT DITSNVVRGD CESLWMQQVY AIGARKIGVT PLPQTGCLPA ARNLFGFHEK GCVSRLHADA
201: QQFNKKLYAD VSKLQKQYSD LKIVVYDIFS PLYDLVQSPA KSGFSEATKG CCGTRTVRDK FDFVQSKILR DMLQCYSVTQ CVFWDNVHPF EAANEILAPA
301: LIGQGFSLLG
101: VNVGKNNYLS ALLRAEYPTY GREFANLKST ARFCKGKLVT DITSNVVRGD CESLWMQQVY AIGARKIGVT PLPQTGCLPA ARNLFGFHEK GCVSRLHADA
201: QQFNKKLYAD VSKLQKQYSD LKIVVYDIFS PLYDLVQSPA KSGFSEATKG CCGTRTVRDK FDFVQSKILR DMLQCYSVTQ CVFWDNVHPF EAANEILAPA
301: LIGQGFSLLG
001: MDRCTSSFLL LTLVSTLSIL QISFAQLVPA IMTFGDSVVD VGNNNYLPTL FRADYPPYGR DFANHKATGR FCNGKLATDI TAETLGFTKY PPAYLSPEAS
101: GKNLLIGANF ASAASGYDDK AALLNHAIPL YQQVEYFKEY KSKLIKIAGS KKADSIIKGA ICLLSAGSSD FVQNYYVNPL LYKVYTVDAY GSFLIDNFST
201: FIKQVYAVGA RKIGVTSLPP TGCLPAARTL FGFHEKGCVS RLNTDAQNFN KKLNAAASKL QKQYSDLKIV VFDIYSPLYD LVQNPSKSGF TEATKGCCGT
301: GTVETTSLLC NPKSFGTCSN ATQYVFWDSV HPSEAANEIL ATALIGQGFS LLG
101: GKNLLIGANF ASAASGYDDK AALLNHAIPL YQQVEYFKEY KSKLIKIAGS KKADSIIKGA ICLLSAGSSD FVQNYYVNPL LYKVYTVDAY GSFLIDNFST
201: FIKQVYAVGA RKIGVTSLPP TGCLPAARTL FGFHEKGCVS RLNTDAQNFN KKLNAAASKL QKQYSDLKIV VFDIYSPLYD LVQNPSKSGF TEATKGCCGT
301: GTVETTSLLC NPKSFGTCSN ATQYVFWDSV HPSEAANEIL ATALIGQGFS LLG
Arabidopsis Description
APGGDSL esterase/lipase APG [Source:UniProtKB/Swiss-Prot;Acc:Q9LU14]
SUBAcon: [endoplasmic reticulum,vacuole]
SUBAcon: [endoplasmic reticulum,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.