Factsheet for GSMUA_Achr2P16800_001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, vacuole

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 6
plasma membrane 5
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, vacuole
Any Predictor:	plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr2P15100_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G16370.1	GSMUA_Achr2P15100_001	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P08930_001	Banana	endoplasmic reticulum, extracellular	81.84	81.62
Os06t0148200-01	Rice	extracellular	72.07	73.5
VIT_09s0002g03140.t01	Wine grape	extracellular	71.23	71.63
EER87840	Sorghum	extracellular, vacuole	71.79	71.39
Zm00001d011661_P001	Maize	extracellular	70.67	70.87
TraesCS7D01G093200.1	Wheat	extracellular	68.72	70.09
TraesCS4A01G397000.1	Wheat	extracellular	68.72	70.09
TraesCS7A01G097100.1	Wheat	golgi	67.88	69.23
KRH47190	Soybean	nucleus	68.16	69.12
Solyc03g121180.2.1	Tomato	nucleus	66.48	66.3
KRH23361	Soybean	nucleus	65.36	66.29
KRH44252	Soybean	nucleus	67.04	65.75
PGSC0003DMT400006459	Potato	extracellular	65.92	65.74
AT3G16370.1	Thale cress	endoplasmic reticulum, vacuole	63.41	64.31
KRH09971	Soybean	nucleus	61.17	64.04
Bra027168.1-P	Field mustard	extracellular	62.57	63.28
HORVU7Hr1G021630.2	Barley	cytosol, plastid	47.77	63.1
CDY56196	Canola	vacuole	62.85	62.85
HORVU7Hr1G021310.7	Barley	extracellular	68.72	62.44
CDY30167	Canola	extracellular	61.73	62.43
TraesCS7D01G094500.1	Wheat	extracellular	59.5	60.34
PGSC0003DMT400006461	Potato	extracellular	60.06	59.89
TraesCS4A01G398500.1	Wheat	plasma membrane	58.66	59.49
GSMUA_Achr4P17640_001	Banana	extracellular, plasma membrane	59.22	59.22
HORVU7Hr1G021580.1	Barley	extracellular	58.38	59.21
TraesCS4A01G398600.1	Wheat	extracellular	58.38	59.21
TraesCS7A01G099900.1	Wheat	extracellular, golgi, plasma membrane	59.22	59.05
TraesCS4A01G398700.1	Wheat	extracellular	58.38	58.38
VIT_09s0002g03150.t01	Wine grape	extracellular	57.82	58.31
HORVU7Hr1G021460.4	Barley	extracellular	57.26	58.24
TraesCS7D01G094000.1	Wheat	extracellular	56.15	57.27
TraesCS4A01G397900.1	Wheat	extracellular	56.42	57.06
HORVU2Hr1G002340.1	Barley	cytosol, plastid	40.78	56.59
Zm00001d036175_P001	Maize	endoplasmic reticulum, extracellular, vacuole	55.03	54.87
EER87852	Sorghum	extracellular	55.31	54.85
TraesCS4A01G399300.1	Wheat	endoplasmic reticulum	53.07	52.49
GSMUA_Achr2P12520_001	Banana	plastid	57.54	52.02
TraesCS7D01G094900.1	Wheat	endoplasmic reticulum, golgi	52.51	51.93
Solyc03g121170.2.1	Tomato	nucleus	60.34	51.8
TraesCS7A01G100600.1	Wheat	endoplasmic reticulum, golgi	52.79	51.64
HORVU7Hr1G021620.2	Barley	endoplasmic reticulum, golgi, mitochondrion	52.79	51.36
TraesCS7A01G100200.1	Wheat	extracellular	46.65	49.41
TraesCS3D01G431500.1	Wheat	endoplasmic reticulum, golgi	53.35	48.35
Os06t0149100-01	Rice	cytosol	21.79	47.56
HORVU0Hr1G019420.1	Barley	endoplasmic reticulum, mitochondrion	27.65	42.67
CDX75880	Canola	vacuole	31.84	36.77

Protein Annotations

EnsemblPlants:GSMUA_Achr2P16800_001	EnsemblPlants:GSMUA_Achr2T16800_001	EnsemblPlantsGene:GSMUA_Achr2G16800_001	Gene3D:3.40.50.1110	GO:GO:0003674	GO:GO:0003824
GO:GO:0016787	GO:GO:0016788	InterPro:GDSL	InterPro:IPR036514	InterPro:SGNH_hydro_sf	InterPro:SGNH_plant_lipase_like
ncoils:Coil	PANTHER:PTHR22835	PANTHER:PTHR22835:SF134	PFAM:PF00657	SignalP:SignalP-noTM	SUPFAM:SSF52266
UniParc:UPI00029617DB	UniProt:M0S8M1	MapMan:35.1	:	:	:

Description

GDSL esterase/lipase APG [Source:GMGC_GENE;Acc:GSMUA_Achr2G16800_001]

Coordinates

chr2:-:17558091..17559857

Molecular Weight (calculated)

38903.0 Da

IEP (calculated)

6.704

GRAVY (calculated)

0.000

Length

358 amino acids

Sequence
(BLAST)

001: MARRFNSVGE LVTLALFFLH FVGGDAQSSA ALVPALITFG DSTVDVGNND YLKTVFRADF PPYGRDFKNH EPTGRFCNGK LATDLTADTL GFTTYPPAYL
101: SPQASGKNLL IGANFASAGS GLYDETSYLS HAIPLTQQLE YYKEYQSKLA HVAGSSQAKA IISDALYIVS TGASDFIQNY YINPFLFKTQ SPDQFSSFLV
201: DIFSNFIKNL YGLGARRIGV TSLPPLGCLP VTITLFGHGS NRCVTRLNSD AQNYNRKLNA ATNSLAKHLP NLKIAVFDIY KPLDDLVTKP SDFGFFEARR
301: GCCGTGTVET TSLLCNQHSI GTCPNATGYV FWDSVHPSES ANQVLADSLI VEGINLIL

Best Arabidopsis Sequence Match ( AT3G16370.1 )
(BLAST)

001: MDRCTSSFLL LTLVSTLSIL QISFAQLVPA IMTFGDSVVD VGNNNYLPTL FRADYPPYGR DFANHKATGR FCNGKLATDI TAETLGFTKY PPAYLSPEAS
101: GKNLLIGANF ASAASGYDDK AALLNHAIPL YQQVEYFKEY KSKLIKIAGS KKADSIIKGA ICLLSAGSSD FVQNYYVNPL LYKVYTVDAY GSFLIDNFST
201: FIKQVYAVGA RKIGVTSLPP TGCLPAARTL FGFHEKGCVS RLNTDAQNFN KKLNAAASKL QKQYSDLKIV VFDIYSPLYD LVQNPSKSGF TEATKGCCGT
301: GTVETTSLLC NPKSFGTCSN ATQYVFWDSV HPSEAANEIL ATALIGQGFS LLG

Arabidopsis Description

APGGDSL esterase/lipase APG [Source:UniProtKB/Swiss-Prot;Acc:Q9LU14]
SUBAcon: [endoplasmic reticulum,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.