Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 4
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d000055_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G16370.1 | Zm00001d000055_P001 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER87852 | Sorghum | extracellular | 88.86 | 88.37 |
| TraesCS4A01G399300.1 | Wheat | endoplasmic reticulum | 76.32 | 75.69 |
| TraesCS7D01G094900.1 | Wheat | endoplasmic reticulum, golgi | 76.04 | 75.41 |
| TraesCS7A01G100600.1 | Wheat | endoplasmic reticulum, golgi | 76.04 | 74.59 |
| HORVU7Hr1G021620.2 | Barley | endoplasmic reticulum, golgi, mitochondrion | 75.77 | 73.91 |
| TraesCS3D01G431500.1 | Wheat | endoplasmic reticulum, golgi | 76.32 | 69.37 |
| Os06t0149100-01 | Rice | cytosol | 30.92 | 67.68 |
| Zm00001d011661_P001 | Maize | extracellular | 59.05 | 59.38 |
| HORVU0Hr1G019420.1 | Barley | endoplasmic reticulum, mitochondrion | 38.16 | 59.05 |
| GSMUA_Achr7P08930_001 | Banana | endoplasmic reticulum, extracellular | 55.99 | 55.99 |
| GSMUA_Achr2P16800_001 | Banana | extracellular, vacuole | 54.87 | 55.03 |
| VIT_09s0002g03140.t01 | Wine grape | extracellular | 54.04 | 54.49 |
| KRH47190 | Soybean | nucleus | 52.65 | 53.54 |
| VIT_09s0002g03150.t01 | Wine grape | extracellular | 51.81 | 52.39 |
| KRH23361 | Soybean | nucleus | 50.97 | 51.84 |
| AT3G16370.1 | Thale cress | endoplasmic reticulum, vacuole | 50.97 | 51.84 |
| Bra027168.1-P | Field mustard | extracellular | 50.97 | 51.69 |
| CDY56196 | Canola | vacuole | 51.25 | 51.4 |
| KRH44252 | Soybean | nucleus | 51.81 | 50.96 |
| CDY30167 | Canola | extracellular | 50.14 | 50.85 |
| PGSC0003DMT400006459 | Potato | extracellular | 50.42 | 50.42 |
| Solyc03g121180.2.1 | Tomato | nucleus | 49.86 | 49.86 |
| KRH09971 | Soybean | nucleus | 47.35 | 49.71 |
| Zm00001d033522_P001 | Maize | endoplasmic reticulum, extracellular, plasma membrane | 48.47 | 48.47 |
| PGSC0003DMT400006461 | Potato | extracellular | 48.19 | 48.19 |
| Solyc03g121170.2.1 | Tomato | nucleus | 49.03 | 42.21 |
| Zm00001d024117_P001 | Maize | cytosol, mitochondrion | 12.53 | 32.85 |
| Zm00001d044521_P001 | Maize | cytosol, mitochondrion | 12.53 | 32.85 |
| CDX75880 | Canola | vacuole | 28.13 | 32.58 |
Protein Annotations
| EntrezGene:100272736 | Gene3D:3.40.50.1110 | MapMan:35.1 | ProteinID:AQK80402.1 | UniProt:B4FQB9 | EMBL:BT039307 |
| EMBL:BT039721 | ncoils:Coil | InterPro:GDSL | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0016787 |
| GO:GO:0016788 | InterPro:IPR036514 | PFAM:PF00657 | PANTHER:PTHR22835 | PANTHER:PTHR22835:SF251 | InterPro:SGNH_hydro_sf |
| InterPro:SGNH_plant_lipase_like | SUPFAM:SSF52266 | SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI00017B7D7E | EnsemblPlantsGene:Zm00001d036175 |
| EnsemblPlants:Zm00001d036175_P001 | EnsemblPlants:Zm00001d036175_T001 | SEG:seg | : | : | : |
Description
GDSL esterase/lipase APG
Coordinates
chr6:+:75713940..75715842
Molecular Weight (calculated)
38392.5 Da
IEP (calculated)
8.416
GRAVY (calculated)
-0.016
Length
359 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSQLVVVC LFVASAVTVT MNGGAQAQAQ PIVPAVISFG DSTVDVGNNN YLPGAVFKAD YAPYGQGFAR HKATGRFSDG KIVTDITAET LGFESYAPPY
101: LSPQASGKNL LTGANFASAA SSYYDDTAAM YDAITLTQQL KYYKEYQSKL AAVAGRARAR AILGDALYVV STGTGDFLQN YYHNASLSHR YDVEQYTDLL
201: VGIFSGFANE LYRLGARRIG VTSMPPLGCL PASIRLYGDG KGACVPRLNR DAETFNAKLN ATVKALKRRH ADLKLAILDI YTPLRKLAQD PAAYGFADAR
301: GTCCRTGTAK TRVYLCNPTT AGTCRNASSY VFFDAVHPSE AANVFIAEST VDAGIELVT
101: LSPQASGKNL LTGANFASAA SSYYDDTAAM YDAITLTQQL KYYKEYQSKL AAVAGRARAR AILGDALYVV STGTGDFLQN YYHNASLSHR YDVEQYTDLL
201: VGIFSGFANE LYRLGARRIG VTSMPPLGCL PASIRLYGDG KGACVPRLNR DAETFNAKLN ATVKALKRRH ADLKLAILDI YTPLRKLAQD PAAYGFADAR
301: GTCCRTGTAK TRVYLCNPTT AGTCRNASSY VFFDAVHPSE AANVFIAEST VDAGIELVT
001: MDRCTSSFLL LTLVSTLSIL QISFAQLVPA IMTFGDSVVD VGNNNYLPTL FRADYPPYGR DFANHKATGR FCNGKLATDI TAETLGFTKY PPAYLSPEAS
101: GKNLLIGANF ASAASGYDDK AALLNHAIPL YQQVEYFKEY KSKLIKIAGS KKADSIIKGA ICLLSAGSSD FVQNYYVNPL LYKVYTVDAY GSFLIDNFST
201: FIKQVYAVGA RKIGVTSLPP TGCLPAARTL FGFHEKGCVS RLNTDAQNFN KKLNAAASKL QKQYSDLKIV VFDIYSPLYD LVQNPSKSGF TEATKGCCGT
301: GTVETTSLLC NPKSFGTCSN ATQYVFWDSV HPSEAANEIL ATALIGQGFS LLG
101: GKNLLIGANF ASAASGYDDK AALLNHAIPL YQQVEYFKEY KSKLIKIAGS KKADSIIKGA ICLLSAGSSD FVQNYYVNPL LYKVYTVDAY GSFLIDNFST
201: FIKQVYAVGA RKIGVTSLPP TGCLPAARTL FGFHEKGCVS RLNTDAQNFN KKLNAAASKL QKQYSDLKIV VFDIYSPLYD LVQNPSKSGF TEATKGCCGT
301: GTVETTSLLC NPKSFGTCSN ATQYVFWDSV HPSEAANEIL ATALIGQGFS LLG
Arabidopsis Description
APGGDSL esterase/lipase APG [Source:UniProtKB/Swiss-Prot;Acc:Q9LU14]
SUBAcon: [endoplasmic reticulum,vacuole]
SUBAcon: [endoplasmic reticulum,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.