Factsheet for VIT_09s0002g03150.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 9
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0011g06410.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G16370.1	VIT_01s0011g06410.t01	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_09s0002g03140.t01	Wine grape	extracellular	67.32	67.13
VIT_09s0002g03050.t01	Wine grape	extracellular	19.44	65.71
KRH23361	Soybean	nucleus	64.23	64.59
KRH47190	Soybean	nucleus	63.1	63.46
Solyc03g121180.2.1	Tomato	nucleus	62.82	62.12
PGSC0003DMT400006459	Potato	extracellular	62.82	62.12
KRH44252	Soybean	nucleus	63.38	61.64
KRH09971	Soybean	nucleus	58.31	60.53
PGSC0003DMT400006461	Potato	extracellular	60.85	60.17
Bra027168.1-P	Field mustard	extracellular	58.87	59.04
CDY56196	Canola	vacuole	59.15	58.66
GSMUA_Achr7P08930_001	Banana	endoplasmic reticulum, extracellular	59.15	58.5
CDY30167	Canola	extracellular	58.31	58.47
GSMUA_Achr2P16800_001	Banana	extracellular, vacuole	58.31	57.82
AT3G16370.1	Thale cress	endoplasmic reticulum, vacuole	56.62	56.94
Os06t0148200-01	Rice	extracellular	56.06	56.7
Zm00001d011661_P001	Maize	extracellular	56.06	55.74
EER87840	Sorghum	extracellular, vacuole	55.21	54.44
TraesCS7A01G097100.1	Wheat	golgi	53.24	53.85
TraesCS7D01G093200.1	Wheat	extracellular	52.96	53.56
TraesCS4A01G397000.1	Wheat	extracellular	52.96	53.56
Zm00001d036175_P001	Maize	endoplasmic reticulum, extracellular, vacuole	52.39	51.81
EER87852	Sorghum	extracellular	52.68	51.8
TraesCS4A01G399300.1	Wheat	endoplasmic reticulum	52.11	51.1
TraesCS7D01G094900.1	Wheat	endoplasmic reticulum, golgi	52.11	51.1
Solyc03g121170.2.1	Tomato	nucleus	59.72	50.84
TraesCS7A01G100600.1	Wheat	endoplasmic reticulum, golgi	52.39	50.82
VIT_08s0007g04300.t01	Wine grape	extracellular, vacuole	51.83	50.69
HORVU7Hr1G021620.2	Barley	endoplasmic reticulum, golgi, mitochondrion	52.11	50.27
HORVU7Hr1G021630.2	Barley	cytosol, plastid	37.46	49.08
HORVU7Hr1G021460.4	Barley	extracellular	47.61	48.01
TraesCS4A01G398600.1	Wheat	extracellular	47.61	47.88
HORVU7Hr1G021310.7	Barley	extracellular	52.96	47.72
TraesCS3D01G431500.1	Wheat	endoplasmic reticulum, golgi	52.96	47.59
HORVU7Hr1G021580.1	Barley	extracellular	47.04	47.31
HORVU2Hr1G002340.1	Barley	cytosol, plastid	34.08	46.9
TraesCS4A01G397900.1	Wheat	extracellular	46.76	46.89
TraesCS7D01G094000.1	Wheat	extracellular	46.2	46.72
TraesCS7D01G094500.1	Wheat	extracellular	45.92	46.18
TraesCS4A01G398500.1	Wheat	plasma membrane	45.63	45.89
TraesCS7A01G099900.1	Wheat	extracellular, golgi, plasma membrane	46.2	45.68
TraesCS4A01G398700.1	Wheat	extracellular	45.63	45.25
Os06t0149100-01	Rice	cytosol	20.85	45.12
HORVU0Hr1G019420.1	Barley	endoplasmic reticulum, mitochondrion	28.73	43.97
TraesCS7A01G100200.1	Wheat	extracellular	38.31	40.24
CDX75880	Canola	vacuole	29.3	33.55

Protein Annotations

EntrezGene:100261771	wikigene:100261771	Gene3D:3.40.50.1110	MapMan:35.1	EMBL:AM456273	ProteinID:CAN65530
ProteinID:CAN65530.1	ProteinID:CCB59399	ProteinID:CCB59399.1	UniProt:F6HY76	EMBL:FN596494	InterPro:GDSL
GO:GO:0003674	GO:GO:0003824	GO:GO:0016787	GO:GO:0016788	InterPro:IPR036514	EntrezGene:LOC100261771
wikigene:LOC100261771	PFAM:PF00657	PANTHER:PTHR22835	PANTHER:PTHR22835:SF134	InterPro:SGNH_hydro_sf	InterPro:SGNH_plant_lipase_like
SUPFAM:SSF52266	SignalP:SignalP-noTM	UniParc:UPI00015C9168	ArrayExpress:VIT_09s0002g03150	EnsemblPlantsGene:VIT_09s0002g03150	EnsemblPlants:VIT_09s0002g03150.t01
RefSeq:XP_002277514	RefSeq:XP_002277514.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr9:+:2900812..2902302

Molecular Weight (calculated)

38591.6 Da

IEP (calculated)

9.280

GRAVY (calculated)

0.030

Length

355 amino acids

Sequence
(BLAST)

001: MAIWGGAAAL VLALALQFAT MADAQGTTSI APAMILFGDS AVDSGNNNYF PTAFKANYLP YGKDFISHQP TGRFCNGKLA TDITADILGF ETYPPAYLSP
101: QATGKNLLVG ANFGSAAAGY DDNTAIINHA IPLSQQLEYY KEYRVKLAKV AGSKRAAAIL KGALYLVGFG TADFLQNYYV NPSLKKLYTP DQYSTYLATI
201: FSSFIKDLYG LGARKIGVVP LPPLGCFPET ITMFRYRKHG CIARINKNAQ GFNNKINTTA ISLQKKLPAL KIVVFDIFKP LHDVFTSPSD YGFAEARKGC
301: CQTRKTGTVP ILCDPKSPGT CRNASQYVFW DDVHLSQATN QMLAESMLLQ GISLI

Best Arabidopsis Sequence Match ( AT3G16370.1 )
(BLAST)

001: MDRCTSSFLL LTLVSTLSIL QISFAQLVPA IMTFGDSVVD VGNNNYLPTL FRADYPPYGR DFANHKATGR FCNGKLATDI TAETLGFTKY PPAYLSPEAS
101: GKNLLIGANF ASAASGYDDK AALLNHAIPL YQQVEYFKEY KSKLIKIAGS KKADSIIKGA ICLLSAGSSD FVQNYYVNPL LYKVYTVDAY GSFLIDNFST
201: FIKQVYAVGA RKIGVTSLPP TGCLPAARTL FGFHEKGCVS RLNTDAQNFN KKLNAAASKL QKQYSDLKIV VFDIYSPLYD LVQNPSKSGF TEATKGCCGT
301: GTVETTSLLC NPKSFGTCSN ATQYVFWDSV HPSEAANEIL ATALIGQGFS LLG

Arabidopsis Description

APGGDSL esterase/lipase APG [Source:UniProtKB/Swiss-Prot;Acc:Q9LU14]
SUBAcon: [endoplasmic reticulum,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.