Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- extracellular 3
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU3Hr1G018030.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G16370.1 | HORVU3Hr1G018030.1 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G094000.1 | Wheat | extracellular | 84.94 | 85.19 |
| TraesCS4A01G397900.1 | Wheat | extracellular | 85.23 | 84.75 |
| Os06t0148200-01 | Rice | extracellular | 67.9 | 68.09 |
| HORVU7Hr1G021630.2 | Barley | cytosol, plastid | 51.14 | 66.42 |
| EER87840 | Sorghum | extracellular, vacuole | 67.33 | 65.83 |
| HORVU2Hr1G002340.1 | Barley | cytosol, plastid | 46.88 | 63.95 |
| Zm00001d011661_P001 | Maize | extracellular | 63.64 | 62.75 |
| HORVU7Hr1G021580.1 | Barley | extracellular | 62.78 | 62.61 |
| GSMUA_Achr7P08930_001 | Banana | endoplasmic reticulum, extracellular | 59.94 | 58.77 |
| HORVU7Hr1G021310.7 | Barley | extracellular | 64.77 | 57.87 |
| GSMUA_Achr2P16800_001 | Banana | extracellular, vacuole | 58.24 | 57.26 |
| KRH47190 | Soybean | nucleus | 54.55 | 54.39 |
| AT3G16370.1 | Thale cress | endoplasmic reticulum, vacuole | 53.69 | 53.54 |
| VIT_09s0002g03140.t01 | Wine grape | extracellular | 53.98 | 53.37 |
| KRH23361 | Soybean | nucleus | 53.12 | 52.97 |
| KRH44252 | Soybean | nucleus | 54.83 | 52.88 |
| Bra027168.1-P | Field mustard | extracellular | 53.12 | 52.82 |
| CDY30167 | Canola | extracellular | 53.12 | 52.82 |
| CDY56196 | Canola | vacuole | 53.41 | 52.51 |
| KRH09971 | Soybean | nucleus | 50.28 | 51.75 |
| Solyc03g121180.2.1 | Tomato | nucleus | 52.56 | 51.53 |
| PGSC0003DMT400006459 | Potato | extracellular | 51.99 | 50.97 |
| HORVU4Hr1G004100.1 | Barley | endoplasmic reticulum, plasma membrane | 52.27 | 50.14 |
| PGSC0003DMT400006461 | Potato | extracellular | 49.72 | 48.75 |
| VIT_09s0002g03150.t01 | Wine grape | extracellular | 48.01 | 47.61 |
| HORVU7Hr1G021620.2 | Barley | endoplasmic reticulum, golgi, mitochondrion | 47.44 | 45.38 |
| Solyc03g121170.2.1 | Tomato | nucleus | 49.43 | 41.73 |
| HORVU0Hr1G019420.1 | Barley | endoplasmic reticulum, mitochondrion | 24.43 | 37.07 |
| CDX75880 | Canola | vacuole | 28.69 | 32.58 |
| HORVU3Hr1G089960.1 | Barley | plastid | 13.07 | 22.44 |
| HORVU1Hr1G065930.2 | Barley | mitochondrion | 22.16 | 19.6 |
Protein Annotations
| EnsemblPlants:HORVU7Hr1G021460.4 | EnsemblPlantsGene:HORVU7Hr1G021460 | Gene3D:3.40.50.1110 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0016787 |
| GO:GO:0016788 | InterPro:GDSL | InterPro:IPR036514 | InterPro:SGNH_hydro_sf | InterPro:SGNH_plant_lipase_like | PANTHER:PTHR22835 |
| PANTHER:PTHR22835:SF134 | PFAM:PF00657 | SEG:seg | SignalP:SignalP-noTM | SUPFAM:SSF52266 | UniParc:UPI000B466F23 |
| UniProt:A0A287VMP5 | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chrchr7H:-:30700997..30713741
Molecular Weight (calculated)
38638.4 Da
IEP (calculated)
7.752
GRAVY (calculated)
0.143
Length
352 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVRYLLLLA IFLLPTQPTT QAGKKQPAVP AVMVFGDSLV DVGNNNYIFT IAKANFPPYG RDFKDHVATG RFCNGKLLID FIAEKVGFNS SPPAYLSPQA
101: SGWNLLLGAN FASATSGYND HGTLVNAISF SQQLKYFEEY QGKLAVVAGG SHAHSIISGS LYIISAGSCD FVFTYYINPF LYMTQSAEQF SDRLIGIFNN
201: SVTQLYGMGA RRIGVFSLPP FGCFPVAITL YGHGRNECVL RLNNDIQYHN MKLRATVDSL RKKYHDLKIV VLDIYTPLYN LATSPVSQGF TEAKRACCGT
301: GTVEASILCN PLLPGTCPNA RTYVFWDVWH PSEAANKVIV DSFLDDIDIL VA
101: SGWNLLLGAN FASATSGYND HGTLVNAISF SQQLKYFEEY QGKLAVVAGG SHAHSIISGS LYIISAGSCD FVFTYYINPF LYMTQSAEQF SDRLIGIFNN
201: SVTQLYGMGA RRIGVFSLPP FGCFPVAITL YGHGRNECVL RLNNDIQYHN MKLRATVDSL RKKYHDLKIV VLDIYTPLYN LATSPVSQGF TEAKRACCGT
301: GTVEASILCN PLLPGTCPNA RTYVFWDVWH PSEAANKVIV DSFLDDIDIL VA
001: MDRCTSSFLL LTLVSTLSIL QISFAQLVPA IMTFGDSVVD VGNNNYLPTL FRADYPPYGR DFANHKATGR FCNGKLATDI TAETLGFTKY PPAYLSPEAS
101: GKNLLIGANF ASAASGYDDK AALLNHAIPL YQQVEYFKEY KSKLIKIAGS KKADSIIKGA ICLLSAGSSD FVQNYYVNPL LYKVYTVDAY GSFLIDNFST
201: FIKQVYAVGA RKIGVTSLPP TGCLPAARTL FGFHEKGCVS RLNTDAQNFN KKLNAAASKL QKQYSDLKIV VFDIYSPLYD LVQNPSKSGF TEATKGCCGT
301: GTVETTSLLC NPKSFGTCSN ATQYVFWDSV HPSEAANEIL ATALIGQGFS LLG
101: GKNLLIGANF ASAASGYDDK AALLNHAIPL YQQVEYFKEY KSKLIKIAGS KKADSIIKGA ICLLSAGSSD FVQNYYVNPL LYKVYTVDAY GSFLIDNFST
201: FIKQVYAVGA RKIGVTSLPP TGCLPAARTL FGFHEKGCVS RLNTDAQNFN KKLNAAASKL QKQYSDLKIV VFDIYSPLYD LVQNPSKSGF TEATKGCCGT
301: GTVETTSLLC NPKSFGTCSN ATQYVFWDSV HPSEAANEIL ATALIGQGFS LLG
Arabidopsis Description
APGGDSL esterase/lipase APG [Source:UniProtKB/Swiss-Prot;Acc:Q9LU14]
SUBAcon: [endoplasmic reticulum,vacuole]
SUBAcon: [endoplasmic reticulum,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.