Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, endoplasmic reticulum, golgi
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- endoplasmic reticulum 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU3Hr1G018030.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G16370.1 | HORVU3Hr1G018030.1 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G094900.1 | Wheat | endoplasmic reticulum, golgi | 93.48 | 95.03 |
| TraesCS4A01G399300.1 | Wheat | endoplasmic reticulum | 92.93 | 94.48 |
| TraesCS7A01G100600.1 | Wheat | endoplasmic reticulum, golgi | 92.66 | 93.17 |
| TraesCS3D01G431500.1 | Wheat | endoplasmic reticulum, golgi | 93.21 | 86.84 |
| HORVU0Hr1G019420.1 | Barley | endoplasmic reticulum, mitochondrion | 48.37 | 76.72 |
| Zm00001d036175_P001 | Maize | endoplasmic reticulum, extracellular, vacuole | 73.91 | 75.77 |
| EER87852 | Sorghum | extracellular | 73.64 | 75.07 |
| Os06t0149100-01 | Rice | cytosol | 28.26 | 63.41 |
| VIT_09s0002g03140.t01 | Wine grape | extracellular | 53.8 | 55.62 |
| GSMUA_Achr2P16800_001 | Banana | extracellular, vacuole | 51.36 | 52.79 |
| GSMUA_Achr7P08930_001 | Banana | endoplasmic reticulum, extracellular | 51.36 | 52.65 |
| KRH47190 | Soybean | nucleus | 50.27 | 52.41 |
| HORVU2Hr1G002340.1 | Barley | cytosol, plastid | 36.68 | 52.33 |
| VIT_09s0002g03150.t01 | Wine grape | extracellular | 50.27 | 52.11 |
| KRH23361 | Soybean | nucleus | 49.46 | 51.56 |
| Bra027168.1-P | Field mustard | extracellular | 49.46 | 51.41 |
| CDY56196 | Canola | vacuole | 49.73 | 51.12 |
| AT3G16370.1 | Thale cress | endoplasmic reticulum, vacuole | 48.91 | 50.99 |
| KRH44252 | Soybean | nucleus | 50.54 | 50.96 |
| CDY30167 | Canola | extracellular | 48.64 | 50.56 |
| Solyc03g121180.2.1 | Tomato | nucleus | 49.18 | 50.42 |
| PGSC0003DMT400006459 | Potato | extracellular | 49.18 | 50.42 |
| PGSC0003DMT400006461 | Potato | extracellular | 48.91 | 50.14 |
| KRH09971 | Soybean | nucleus | 46.47 | 50.0 |
| HORVU7Hr1G021630.2 | Barley | cytosol, plastid | 36.41 | 49.45 |
| HORVU7Hr1G021310.7 | Barley | extracellular | 52.45 | 48.98 |
| HORVU7Hr1G021460.4 | Barley | extracellular | 45.38 | 47.44 |
| HORVU7Hr1G021580.1 | Barley | extracellular | 44.84 | 46.74 |
| HORVU4Hr1G004100.1 | Barley | endoplasmic reticulum, plasma membrane | 45.92 | 46.05 |
| Solyc03g121170.2.1 | Tomato | nucleus | 49.73 | 43.88 |
| CDX75880 | Canola | vacuole | 26.63 | 31.61 |
| HORVU3Hr1G089960.1 | Barley | plastid | 16.03 | 28.78 |
| HORVU1Hr1G065930.2 | Barley | mitochondrion | 17.66 | 16.33 |
Protein Annotations
| EnsemblPlants:HORVU7Hr1G021620.2 | EnsemblPlantsGene:HORVU7Hr1G021620 | Gene3D:3.40.50.1110 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0016787 |
| GO:GO:0016788 | InterPro:GDSL | InterPro:IPR036514 | InterPro:SGNH_hydro_sf | InterPro:SGNH_plant_lipase_like | PANTHER:PTHR22835 |
| PANTHER:PTHR22835:SF251 | PFAM:PF00657 | SEG:seg | SignalP:SignalP-noTM | SUPFAM:SSF52266 | UniParc:UPI000B4840F7 |
| UniProt:A0A287VNM0 | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chrchr7H:-:31112648..31114263
Molecular Weight (calculated)
39662.3 Da
IEP (calculated)
9.410
GRAVY (calculated)
-0.080
Length
368 amino acids
Sequence
(BLAST)
(BLAST)
001: VHVRKSKGMP SSRSGSPATQ WRLVLLALPL LVSCGVHGQV VPAVISFGDS TIDVGNNNYL PGAVFKANYA PYGENFRRHR ATGRFSDGKI VTDITAETLG
101: FEGYAPPYLS PLASGKNLLT GANFGSAASS YSDDTAAMYD AITLSQQLRY YKEYRSKLAA VAGRRQARTI LAEALYVVST GTGDFIQNYY HNASLSARYD
201: VDRYCDLLVG IFSGFTDELY RLGARRIGVT TMPPLGCLPA TIRLYGKGRS GCLPRLNRDA ETFNRKLNAT VGALVRRHAG LKVAVFDVYT PLRDLSERPA
301: AQGFAEAGRT CCRTGKAGTR VYLCDPATAA GMCRNASSYV YFDGVHPSEA ANLVIAESLV SAGIDLLT
101: FEGYAPPYLS PLASGKNLLT GANFGSAASS YSDDTAAMYD AITLSQQLRY YKEYRSKLAA VAGRRQARTI LAEALYVVST GTGDFIQNYY HNASLSARYD
201: VDRYCDLLVG IFSGFTDELY RLGARRIGVT TMPPLGCLPA TIRLYGKGRS GCLPRLNRDA ETFNRKLNAT VGALVRRHAG LKVAVFDVYT PLRDLSERPA
301: AQGFAEAGRT CCRTGKAGTR VYLCDPATAA GMCRNASSYV YFDGVHPSEA ANLVIAESLV SAGIDLLT
001: MDRCTSSFLL LTLVSTLSIL QISFAQLVPA IMTFGDSVVD VGNNNYLPTL FRADYPPYGR DFANHKATGR FCNGKLATDI TAETLGFTKY PPAYLSPEAS
101: GKNLLIGANF ASAASGYDDK AALLNHAIPL YQQVEYFKEY KSKLIKIAGS KKADSIIKGA ICLLSAGSSD FVQNYYVNPL LYKVYTVDAY GSFLIDNFST
201: FIKQVYAVGA RKIGVTSLPP TGCLPAARTL FGFHEKGCVS RLNTDAQNFN KKLNAAASKL QKQYSDLKIV VFDIYSPLYD LVQNPSKSGF TEATKGCCGT
301: GTVETTSLLC NPKSFGTCSN ATQYVFWDSV HPSEAANEIL ATALIGQGFS LLG
101: GKNLLIGANF ASAASGYDDK AALLNHAIPL YQQVEYFKEY KSKLIKIAGS KKADSIIKGA ICLLSAGSSD FVQNYYVNPL LYKVYTVDAY GSFLIDNFST
201: FIKQVYAVGA RKIGVTSLPP TGCLPAARTL FGFHEKGCVS RLNTDAQNFN KKLNAAASKL QKQYSDLKIV VFDIYSPLYD LVQNPSKSGF TEATKGCCGT
301: GTVETTSLLC NPKSFGTCSN ATQYVFWDSV HPSEAANEIL ATALIGQGFS LLG
Arabidopsis Description
APGGDSL esterase/lipase APG [Source:UniProtKB/Swiss-Prot;Acc:Q9LU14]
SUBAcon: [endoplasmic reticulum,vacuole]
SUBAcon: [endoplasmic reticulum,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.