CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
OQU92006

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G16370.1	OQU92006	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d036175_P001	Maize	endoplasmic reticulum, extracellular, vacuole	88.37	88.86
TraesCS4A01G399300.1	Wheat	endoplasmic reticulum	75.62	75.41
TraesCS7D01G094900.1	Wheat	endoplasmic reticulum, golgi	75.07	74.86
TraesCS7A01G100600.1	Wheat	endoplasmic reticulum, golgi	75.35	74.32
HORVU7Hr1G021620.2	Barley	endoplasmic reticulum, golgi, mitochondrion	75.07	73.64
TraesCS3D01G431500.1	Wheat	endoplasmic reticulum, golgi	75.9	69.37
Os06t0149100-01	Rice	cytosol	31.3	68.9
HORVU0Hr1G019420.1	Barley	endoplasmic reticulum, mitochondrion	38.23	59.48
EER87840	Sorghum	extracellular, vacuole	57.06	57.22
GSMUA_Achr7P08930_001	Banana	endoplasmic reticulum, extracellular	55.68	55.99
GSMUA_Achr2P16800_001	Banana	extracellular, vacuole	54.85	55.31
VIT_09s0002g03140.t01	Wine grape	extracellular	53.74	54.49
KRH47190	Soybean	nucleus	52.63	53.82
VIT_09s0002g03150.t01	Wine grape	extracellular	51.8	52.68
AT3G16370.1	Thale cress	endoplasmic reticulum, vacuole	51.25	52.41
KRH44252	Soybean	nucleus	52.63	52.05
KRH23361	Soybean	nucleus	50.69	51.84
Bra027168.1-P	Field mustard	extracellular	50.69	51.69
CDY56196	Canola	vacuole	50.97	51.4
PGSC0003DMT400006459	Potato	extracellular	50.69	50.97
CDY30167	Canola	extracellular	49.86	50.85
Solyc03g121180.2.1	Tomato	nucleus	50.14	50.42
PGSC0003DMT400006461	Potato	extracellular	49.58	49.86
KRH09971	Soybean	nucleus	47.09	49.71
EER93662	Sorghum	endoplasmic reticulum, plasma membrane	47.65	47.51
Solyc03g121170.2.1	Tomato	nucleus	50.42	43.65
CDX75880	Canola	vacuole	26.87	31.29

Protein Annotations

Gene3D:3.40.50.1110	MapMan:35.1	UniProt:C5Z4A0	ncoils:Coil	EnsemblPlants:EER87852	ProteinID:EER87852
ProteinID:EER87852.2	InterPro:GDSL	GO:GO:0003674	GO:GO:0003824	GO:GO:0004124	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006535	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0016787	GO:GO:0016788
GO:GO:0030170	InterPro:IPR036514	PFAM:PF00657	PANTHER:PTHR22835	PANTHER:PTHR22835:SF251	InterPro:SGNH_hydro_sf
InterPro:SGNH_plant_lipase_like	EnsemblPlantsGene:SORBI_3010G038500	SUPFAM:SSF52266	unigene:Sbi.17017	SignalP:SignalP-noTM	TMHMM:TMhelix
UniParc:UPI0007F2FF16	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:+:3071694..3073640

Molecular Weight (calculated)

38540.8 Da

IEP (calculated)

7.379

GRAVY (calculated)

-0.002

Length

361 amino acids

Sequence
(BLAST)

001: MASLTVVSLL VASAAMMTMM MSGGGGGGVQ AQPIVPAVIS FGDSTIDVGN NNYLPGAVFK ADYAPYGQDF VSHEATGRFS DGKIVTDITA ETLGFESYAP
101: PYLSPQASGK NLLIGANFAS AASSYYDDTA AMYDAITLTQ QLKYYKEYQS KLGAVAGRAK AGAILADALY VVSTGTGDFL QNYYHNASLS RRYNVHQYCD
201: LLAGIFSGFA NELYRLGARR IGVTSMPPLG CLPASIRLYG EGKDACVPRL NRDAETFNQK LNATVRALKR RHADLKVAIF DIYTPLRQLA QDPAAYGFGN
301: ARGTCCQTGT AKTRVYLCNP TTAGTCRNAS SYVFFDGVHP SEAANVFMAE SMVDAGIELV T

Best Arabidopsis Sequence Match ( AT3G16370.1 )
(BLAST)

001: MDRCTSSFLL LTLVSTLSIL QISFAQLVPA IMTFGDSVVD VGNNNYLPTL FRADYPPYGR DFANHKATGR FCNGKLATDI TAETLGFTKY PPAYLSPEAS
101: GKNLLIGANF ASAASGYDDK AALLNHAIPL YQQVEYFKEY KSKLIKIAGS KKADSIIKGA ICLLSAGSSD FVQNYYVNPL LYKVYTVDAY GSFLIDNFST
201: FIKQVYAVGA RKIGVTSLPP TGCLPAARTL FGFHEKGCVS RLNTDAQNFN KKLNAAASKL QKQYSDLKIV VFDIYSPLYD LVQNPSKSGF TEATKGCCGT
301: GTVETTSLLC NPKSFGTCSN ATQYVFWDSV HPSEAANEIL ATALIGQGFS LLG

Arabidopsis Description

APGGDSL esterase/lipase APG [Source:UniProtKB/Swiss-Prot;Acc:Q9LU14]
SUBAcon: [endoplasmic reticulum,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.