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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, plasma membrane

Predictor Summary:
  • extracellular 6
  • endoplasmic reticulum 6
  • vacuole 5
  • plasma membrane 7
  • golgi 5
  • plastid 2
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, plasma membrane
Any Predictor:plastid, secretory
BaCelLo:secretory
ChloroP:plastid
iPSORT:secretory
MultiLoc:endoplasmic reticulum
Plant-mPloc:extracellular, plasma membrane
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plastid
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d033522_P001 Maize endoplasmic reticulum, extracellular, plasma membrane 92.27 93.04
TraesCS4A01G285700.1 Wheat endoplasmic reticulum, plasma membrane 83.43 85.55
TraesCS4D01G024900.1 Wheat endoplasmic reticulum, plasma membrane 85.08 85.08
TraesCS4B01G027100.1 Wheat endoplasmic reticulum, plasma membrane 83.7 83.24
HORVU4Hr1G004100.1 Barley endoplasmic reticulum, plasma membrane 83.43 82.29
Os03t0683800-01 Rice plastid 77.62 78.71
GSMUA_Achr4P17640_001 Banana extracellular, plasma membrane 65.19 65.92
PGSC0003DMT400088508 Potato extracellular 26.24 59.75
AT5G03810.1 Thale cress endoplasmic reticulum, extracellular, plasma membrane 56.63 58.07
Bra005781.1-P Field mustard plastid 33.43 57.89
VIT_08s0007g04300.t01 Wine grape extracellular, vacuole 58.01 57.85
CDX95394 Canola extracellular 56.08 57.83
Bra005782.1-P Field mustard extracellular, plasma membrane 56.35 57.79
GSMUA_Achr2P12520_001 Banana plastid 62.98 57.58
AT3G53100.1 Thale cress extracellular 55.8 57.55
PGSC0003DMT400021670 Potato extracellular 55.25 57.47
CDX80889 Canola extracellular, plasma membrane 55.8 57.22
PGSC0003DMT400001233 Potato extracellular, plasma membrane 55.8 57.22
Bra028818.1-P Field mustard extracellular, plasma membrane 55.25 57.14
KRH26558 Soybean endoplasmic reticulum, extracellular, vacuole 55.25 57.14
Solyc11g066700.1.1 Tomato extracellular, plasma membrane 55.8 56.9
Solyc10g085740.1.1 Tomato extracellular 54.7 56.9
CDX76226 Canola extracellular, plasma membrane 54.97 56.7
Bra040686.1-P Field mustard extracellular, plasma membrane 54.97 56.7
CDY04898 Canola extracellular, plasma membrane 54.7 56.57
CDY50286 Canola extracellular 55.25 55.56
CDY09169 Canola endoplasmic reticulum, extracellular, plasma membrane 55.25 55.4
Bra020216.1-P Field mustard extracellular 54.97 55.28
AT5G22810.1 Thale cress extracellular 54.7 55.15
EER87840 Sorghum extracellular, vacuole 54.7 55.0
CDY14175 Canola extracellular, plasma membrane 49.45 54.74
KRH30531 Soybean extracellular, vacuole 52.49 53.82
CDY11271 Canola extracellular, plasma membrane 53.87 53.13
AT5G03820.2 Thale cress endoplasmic reticulum, extracellular, plasma membrane 56.08 52.73
KRH25150 Soybean extracellular 43.65 51.63
KRH22747 Soybean mitochondrion 56.91 48.47
Solyc09g008690.1.1 Tomato extracellular 31.22 48.29
PGSC0003DMT400033798 Potato extracellular 30.94 47.86
EER87852 Sorghum extracellular 47.51 47.65
Protein Annotations
Gene3D:3.40.50.1110MapMan:35.1EntrezGene:8067270UniProt:C5WPL7EnsemblPlants:EER93662ProteinID:EER93662
ProteinID:EER93662.1InterPro:GDSLGO:GO:0003674GO:GO:0003824GO:GO:0006629GO:GO:0008150
GO:GO:0008152GO:GO:0016298GO:GO:0016787GO:GO:0016788InterPro:IPR036514InterPro:Lipase_GDSL_AS
PFAM:PF00657ScanProsite:PS01098PANTHER:PTHR22835PANTHER:PTHR22835:SF146InterPro:SGNH_hydro_sfInterPro:SGNH_plant_lipase_like
EnsemblPlantsGene:SORBI_3001G135600SUPFAM:SSF52266unigene:Sbi.1297SignalP:SignalP-noTMTMHMM:TMhelixUniParc:UPI0001A82A08
RefSeq:XP_002466664.1SEG:seg::::
Description
hypothetical protein
Coordinates
chr1:-:10687166..10691438
Molecular Weight (calculated)
38336.4 Da
IEP (calculated)
6.656
GRAVY (calculated)
0.057
Length
362 amino acids
Sequence
(BLAST)
001: MKMSSSSVPA AAAVAAVLLL SAVWTTTTVT GQALVPGVMI FGDSVVDAGN NNRLATLVRA DFPPYGRDFP ATHAPTGRFC NGKLATDYTV ESLGLSSYPP
101: AYLSEEAQSN NKSLLHGANF ASGAAGYLDA TAGLYGAISL RRQAEYFREY QSRVAASAGE RRARELTSGS IYVVSAGTSD YVQNYYVNPM LSAAYTPDQF
201: ADALMPPFTS FVEGLYSLGA RRIGVTSLPP MGCLPASVTL FGGGNTGCVE RLNNDSLTFN RKLGVAADAV KRRHSDLKLV VFDIYQPLLD LVQNPTSAGF
301: FESRRACCGT GTIETSVLCH QGAPGTCTNA TGYVFWDGFH PTDAANRVLA DALLLQGLQL IA
Best Arabidopsis Sequence Match ( AT5G03820.1 )
(BLAST)
001: MNKMKMFIIM LMTFSVIACF YAGVGTGEPL VPALIIMGDS VVDAGNNNRL NTLIKANFPP YGRDFLAHNA TGRFSNGKLA TDFTAESLGF TSYPVPYLSQ
101: EANGTNLLTG ANFASGASGY DDGTAIFYNA ITLNQQLKNY KEYQNKVTNI VGSERANKIF SGAIHLLSTG SSDFLQSYYI NPILNRIFTP DQYSDRLMKP
201: YSTFVQNLYD LGARKIGVTT LPPLGCLPAA ITLFGETGNN NTCVERLNQD AVSFNTKLNN TSMNLTNNLP GLKLVVFDIY NPLLNMAMNP VENGFFESRR
301: ACCGTGTVET SFLCNARSVG TCSNATNYVF WDGFHPSEAA NRVIANNLLV QGIPLIS
Arabidopsis Description
GDSL-like Lipase/Acylhydrolase family protein [Source:TAIR;Acc:AT5G03820]
SUBAcon: [extracellular]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.