Factsheet for PGSC0003DMT400021670

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 6
vacuole 5
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g085740.1.1	Tomato	extracellular	97.41	97.41
PGSC0003DMT400088508	Potato	extracellular	37.93	83.02
VIT_08s0007g04300.t01	Wine grape	extracellular, vacuole	76.44	73.28
PGSC0003DMT400033798	Potato	extracellular	45.98	68.38
PGSC0003DMT400001233	Potato	extracellular, plasma membrane	63.79	62.89
GSMUA_Achr4P17640_001	Banana	extracellular, plasma membrane	64.66	62.85
CDX95394	Canola	extracellular	62.36	61.82
Bra040686.1-P	Field mustard	extracellular, plasma membrane	61.49	60.97
CDX76226	Canola	extracellular, plasma membrane	61.49	60.97
AT3G53100.1	Thale cress	extracellular	61.49	60.97
Os03t0683800-01	Rice	plastid	59.2	57.7
TraesCS4A01G285700.1	Wheat	endoplasmic reticulum, plasma membrane	57.76	56.94
Zm00001d033522_P001	Maize	endoplasmic reticulum, extracellular, plasma membrane	58.33	56.55
TraesCS4D01G024900.1	Wheat	endoplasmic reticulum, plasma membrane	58.62	56.35
TraesCS4B01G027100.1	Wheat	endoplasmic reticulum, plasma membrane	58.05	55.49
HORVU4Hr1G004100.1	Barley	endoplasmic reticulum, plasma membrane	58.33	55.31
EER93662	Sorghum	endoplasmic reticulum, plasma membrane	57.47	55.25
PGSC0003DMT400006459	Potato	extracellular	56.03	54.32
GSMUA_Achr2P12520_001	Banana	plastid	61.49	54.04
PGSC0003DMT400006461	Potato	extracellular	53.74	52.09
PGSC0003DMT400076811	Potato	cytosol	26.72	43.87
PGSC0003DMT400027844	Potato	extracellular	14.94	34.9
PGSC0003DMT400020220	Potato	cytosol	24.14	25.93

Protein Annotations

EntrezGene:102588400	Gene3D:3.40.50.1110	MapMan:35.1	InterPro:GDSL	GO:GO:0003674	GO:GO:0003824
GO:GO:0016787	GO:GO:0016788	InterPro:IPR036514	UniProt:M1AFI9	PFAM:PF00657	EnsemblPlantsGene:PGSC0003DMG400008407
PGSC:PGSC0003DMG400008407	EnsemblPlants:PGSC0003DMT400021670	PANTHER:PTHR22835	PANTHER:PTHR22835:SF146	InterPro:SGNH_hydro_sf	InterPro:SGNH_plant_lipase_like
SUPFAM:SSF52266	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI000294DFD6	RefSeq:XP_006338923.1	SEG:seg

Description

Zinc finger protein [Source:PGSC_GENE;Acc:PGSC0003DMG400008407]

Coordinates

chr10:+:53100565..53103832

Molecular Weight (calculated)

38677.2 Da

IEP (calculated)

8.601

GRAVY (calculated)

-0.023

Length

348 amino acids

Sequence
(BLAST)

001: MRFSKYIVFF LVVFFYVANG DPLVPALNIF GDSVVDVGNN NNLTTLIKAN FLPYGRDFVT HRPTGRFCNG KLATDFTAEY LGFTTYPPAY LSPEARGRNI
101: LTGVNFASAA SGYYERTPQL YRALTLAQQL QYYREWQAKV VNLVGRTQAN SIISGGIHLL SAGSSDFIQN YYVNPMLNRI YSPDRFSDIL MQSYTTFIQN
201: LYGMGARKIG VTTLPPTGCL PAAITLFGRG SNQCVARLNQ DAVFFNAKLN RTSESLKSRL PGLKLVVFDI YQPLLDMITK PTDSGFFESR RACCGTGTLE
301: TSFLCNVRSI GTCSNATDYV FWDGFHPSEA ANEKLAQSLL EQGFDLIS

Best Arabidopsis Sequence Match ( AT5G03820.1 )
(BLAST)

001: MNKMKMFIIM LMTFSVIACF YAGVGTGEPL VPALIIMGDS VVDAGNNNRL NTLIKANFPP YGRDFLAHNA TGRFSNGKLA TDFTAESLGF TSYPVPYLSQ
101: EANGTNLLTG ANFASGASGY DDGTAIFYNA ITLNQQLKNY KEYQNKVTNI VGSERANKIF SGAIHLLSTG SSDFLQSYYI NPILNRIFTP DQYSDRLMKP
201: YSTFVQNLYD LGARKIGVTT LPPLGCLPAA ITLFGETGNN NTCVERLNQD AVSFNTKLNN TSMNLTNNLP GLKLVVFDIY NPLLNMAMNP VENGFFESRR
301: ACCGTGTVET SFLCNARSVG TCSNATNYVF WDGFHPSEAA NRVIANNLLV QGIPLIS

Arabidopsis Description

GDSL-like Lipase/Acylhydrolase family protein [Source:TAIR;Acc:AT5G03820]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.