Factsheet for PGSC0003DMT400020220

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY15393	Canola	cytosol	27.47	40.45
AT2G31550.1	Thale cress	cytosol	26.85	39.73
KRH72762	Soybean	cytosol	19.44	35.8
PGSC0003DMT400088508	Potato	extracellular	15.12	30.82
HORVU3Hr1G089960.1	Barley	plastid	17.28	27.32
PGSC0003DMT400027844	Potato	extracellular	12.35	26.85
PGSC0003DMT400076811	Potato	cytosol	17.28	26.42
PGSC0003DMT400001233	Potato	extracellular, plasma membrane	26.54	24.36
PGSC0003DMT400006461	Potato	extracellular	26.85	24.23
PGSC0003DMT400021670	Potato	extracellular	25.93	24.14
PGSC0003DMT400006459	Potato	extracellular	26.54	23.96
PGSC0003DMT400033798	Potato	extracellular	12.65	17.52
Solyc05g043310.1.1	Tomato	extracellular	6.17	15.04

Protein Annotations

EnsemblPlants:PGSC0003DMT400020220	EnsemblPlantsGene:PGSC0003DMG400007815	EntrezGene:102582525	Gene3D:3.40.50.1110	GO:GO:0003674	GO:GO:0003824
GO:GO:0016787	GO:GO:0016788	InterPro:GDSL	InterPro:IPR036514	InterPro:SGNH_hydro_sf	PANTHER:PTHR22835
PANTHER:PTHR22835:SF152	PFAM:PF00657	PGSC:PGSC0003DMG400007815	SEG:seg	UniParc:UPI0002963EE9	UniProt:M1AD44
MapMan:35.1	:	:	:	:	:

Description

GDSL esterase/lipase [Source:PGSC_GENE;Acc:PGSC0003DMG400007815]

Coordinates

chr12:+:1866473..1869718

Molecular Weight (calculated)

33270.1 Da

IEP (calculated)

5.773

GRAVY (calculated)

-0.120

Length

324 amino acids

Sequence
(BLAST)

001: MLSISLGLKK NGVPPYLQRD LLKNDLITGV CFASGGTGYD ELTSTISGVI SMKEELEYFK EYLSKIKDIV GGNSSEVERI VNGALVIVSA GTNDLIFNFY
101: DLPNRRLQFS LSGYQDFLLD KVQSFIKELY YLGCRNIIVN GLPPIGCLPM QITAKSPFFR SCINDENLDA QIYNEKLQDL LIQLQSHLPG SKILYVDTYN
201: FIAGLIHNPQ LHEGRVARKD LGLDLGGGVG VGVGAGVGLG LGGGSGSGAG AGAGSGSGSG SRSSSSSSSS SGSTSSGNGN AGSEAGSYAG SRAGSGSGNR
301: GGSSEAGSEA GTYAGSRAGS GSGN

Best Arabidopsis Sequence Match ( AT1G58430.1 )
(BLAST)

001: MWTSKTISFT LFITTTLLGS CNASAKAKTQ PLFPAILIFG DSTVDTGNNN YPSQTIFRAK HVPYGIDLPN HSPNGRFSNG KIFSDIIATK LNIKQFVPPF
101: LQPNLTDQEI VTGVCFASAG AGYDDQTSLT TQAIRVSEQP NMFKSYIARL KSIVGDKKAM KIINNALVVV SAGPNDFILN YYEVPSWRRM YPSISDYQDF
201: VLSRLNNFVK ELYSLGCRKI LVGGLPPMGC LPIQMTAQFR NVLRFCLEQE NRDSVLYNQK LQKLLPQTQA SLTGSKILYS DVYDPMMEML QNPSKYGFKE
301: TTRGCCGTGF LETSFMCNAY SSMCQNRSEF LFFDSIHPSE ATYNYIGNVL DTKIRGWLKA

Arabidopsis Description

RXF26GDSL esterase/lipase At1g58430 [Source:UniProtKB/Swiss-Prot;Acc:Q9C648]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.