Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 8
- endoplasmic reticulum 5
- vacuole 6
- plasma membrane 5
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400075691 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G16370.1 | PGSC0003DMT400075691 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g121170.2.1 | Tomato | nucleus | 95.26 | 82.01 |
| PGSC0003DMT400006459 | Potato | extracellular | 80.22 | 80.22 |
| KRH47190 | Soybean | nucleus | 71.31 | 72.52 |
| VIT_09s0002g03140.t01 | Wine grape | extracellular | 70.47 | 71.07 |
| KRH44252 | Soybean | nucleus | 72.14 | 70.96 |
| KRH23361 | Soybean | nucleus | 68.8 | 69.97 |
| KRH09971 | Soybean | nucleus | 64.9 | 68.13 |
| AT3G16370.1 | Thale cress | endoplasmic reticulum, vacuole | 62.95 | 64.02 |
| Bra027168.1-P | Field mustard | extracellular | 62.95 | 63.84 |
| CDY56196 | Canola | vacuole | 63.51 | 63.69 |
| CDY30167 | Canola | extracellular | 62.67 | 63.56 |
| GSMUA_Achr7P08930_001 | Banana | endoplasmic reticulum, extracellular | 62.67 | 62.67 |
| Os06t0148200-01 | Rice | extracellular | 60.72 | 62.11 |
| VIT_09s0002g03150.t01 | Wine grape | extracellular | 60.17 | 60.85 |
| EER87840 | Sorghum | extracellular, vacuole | 60.45 | 60.28 |
| Zm00001d011661_P001 | Maize | extracellular | 59.89 | 60.22 |
| GSMUA_Achr2P16800_001 | Banana | extracellular, vacuole | 59.89 | 60.06 |
| TraesCS7A01G097100.1 | Wheat | golgi | 57.1 | 58.4 |
| TraesCS7D01G093200.1 | Wheat | extracellular | 57.1 | 58.4 |
| TraesCS4A01G397000.1 | Wheat | extracellular | 56.82 | 58.12 |
| PGSC0003DMT400021670 | Potato | extracellular | 52.09 | 53.74 |
| PGSC0003DMT400001233 | Potato | extracellular, plasma membrane | 52.65 | 53.54 |
| PGSC0003DMT400088508 | Potato | extracellular | 23.68 | 53.46 |
| HORVU7Hr1G021310.7 | Barley | extracellular | 57.38 | 52.28 |
| HORVU7Hr1G021630.2 | Barley | cytosol, plastid | 39.28 | 52.03 |
| TraesCS4A01G398700.1 | Wheat | extracellular | 51.25 | 51.4 |
| HORVU7Hr1G021580.1 | Barley | extracellular | 49.3 | 50.14 |
| HORVU2Hr1G002340.1 | Barley | cytosol, plastid | 35.93 | 50.0 |
| TraesCS7D01G094500.1 | Wheat | extracellular | 49.03 | 49.86 |
| TraesCS7D01G094000.1 | Wheat | extracellular | 48.75 | 49.86 |
| HORVU7Hr1G021460.4 | Barley | extracellular | 48.75 | 49.72 |
| EER87852 | Sorghum | extracellular | 49.86 | 49.58 |
| TraesCS7D01G094900.1 | Wheat | endoplasmic reticulum, golgi | 49.58 | 49.17 |
| TraesCS4A01G397900.1 | Wheat | extracellular | 48.47 | 49.15 |
| PGSC0003DMT400033798 | Potato | extracellular | 32.03 | 49.15 |
| HORVU7Hr1G021620.2 | Barley | endoplasmic reticulum, golgi, mitochondrion | 50.14 | 48.91 |
| TraesCS4A01G399300.1 | Wheat | endoplasmic reticulum | 49.3 | 48.9 |
| TraesCS4A01G398500.1 | Wheat | plasma membrane | 47.91 | 48.73 |
| TraesCS7A01G100600.1 | Wheat | endoplasmic reticulum, golgi | 49.3 | 48.36 |
| Zm00001d036175_P001 | Maize | endoplasmic reticulum, extracellular, vacuole | 48.19 | 48.19 |
| TraesCS4A01G398600.1 | Wheat | extracellular | 47.35 | 48.16 |
| TraesCS7A01G099900.1 | Wheat | extracellular, golgi, plasma membrane | 47.91 | 47.91 |
| TraesCS7A01G100200.1 | Wheat | extracellular | 43.18 | 45.86 |
| TraesCS3D01G431500.1 | Wheat | endoplasmic reticulum, golgi | 49.58 | 45.06 |
| Os06t0149100-01 | Rice | cytosol | 18.94 | 41.46 |
| HORVU0Hr1G019420.1 | Barley | endoplasmic reticulum, mitochondrion | 26.74 | 41.38 |
| PGSC0003DMT400076811 | Potato | cytosol | 22.28 | 37.74 |
| CDX75880 | Canola | vacuole | 32.03 | 37.1 |
| PGSC0003DMT400027844 | Potato | extracellular | 15.04 | 36.24 |
| PGSC0003DMT400020220 | Potato | cytosol | 24.23 | 26.85 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400006461 | EnsemblPlantsGene:PGSC0003DMG400002520 | Gene3D:3.40.50.1110 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0016787 |
| GO:GO:0016788 | InterPro:GDSL | InterPro:IPR036514 | InterPro:SGNH_hydro_sf | InterPro:SGNH_plant_lipase_like | PANTHER:PTHR22835 |
| PANTHER:PTHR22835:SF134 | PFAM:PF00657 | PGSC:PGSC0003DMG400002520 | SEG:seg | SignalP:SignalP-noTM | SUPFAM:SSF52266 |
| UniParc:UPI000294DFC5 | UniProt:M0ZRD8 | MapMan:35.1 | : | : | : |
Description
Zinc finger protein [Source:PGSC_GENE;Acc:PGSC0003DMG400002520]
Coordinates
chr3:-:60470391..60472686
Molecular Weight (calculated)
39157.2 Da
IEP (calculated)
9.384
GRAVY (calculated)
-0.010
Length
359 amino acids
Sequence
(BLAST)
(BLAST)
001: MGIHNNKPAL VLLLVVVLGS AIRLNSAQDS TTLVPAIITF GDSASDVGNN DYIITLFKAN YPPYGRDFVT HQPTGRFCNG KLVTDMTADA LGFTTYPAAY
101: LSPEASGKNL LIGTNFASAA AGYDDKTAIL NHAIPLSKQM QYYKEYKTKL AKVAGSQKAE SIIKDALYIL SAGTADFLQN YYFNPYLNKI STPHQYSSYL
201: IRIFTRFVKD LYGQGARRIG VTSLPPLGCL PAAKTMFGFH KSGCISKINR DAKQFNKKMN STAIQLRKQL PGLKIAIFDV FQPMYDLVNS PSDHGFVVAN
301: RGCCGTGKVE TTSLFCNPKL AGTCSNATEY VFWDGIHLSQ AANQVLADTL IMQGIYLLG
101: LSPEASGKNL LIGTNFASAA AGYDDKTAIL NHAIPLSKQM QYYKEYKTKL AKVAGSQKAE SIIKDALYIL SAGTADFLQN YYFNPYLNKI STPHQYSSYL
201: IRIFTRFVKD LYGQGARRIG VTSLPPLGCL PAAKTMFGFH KSGCISKINR DAKQFNKKMN STAIQLRKQL PGLKIAIFDV FQPMYDLVNS PSDHGFVVAN
301: RGCCGTGKVE TTSLFCNPKL AGTCSNATEY VFWDGIHLSQ AANQVLADTL IMQGIYLLG
001: MDRCTSSFLL LTLVSTLSIL QISFAQLVPA IMTFGDSVVD VGNNNYLPTL FRADYPPYGR DFANHKATGR FCNGKLATDI TAETLGFTKY PPAYLSPEAS
101: GKNLLIGANF ASAASGYDDK AALLNHAIPL YQQVEYFKEY KSKLIKIAGS KKADSIIKGA ICLLSAGSSD FVQNYYVNPL LYKVYTVDAY GSFLIDNFST
201: FIKQVYAVGA RKIGVTSLPP TGCLPAARTL FGFHEKGCVS RLNTDAQNFN KKLNAAASKL QKQYSDLKIV VFDIYSPLYD LVQNPSKSGF TEATKGCCGT
301: GTVETTSLLC NPKSFGTCSN ATQYVFWDSV HPSEAANEIL ATALIGQGFS LLG
101: GKNLLIGANF ASAASGYDDK AALLNHAIPL YQQVEYFKEY KSKLIKIAGS KKADSIIKGA ICLLSAGSSD FVQNYYVNPL LYKVYTVDAY GSFLIDNFST
201: FIKQVYAVGA RKIGVTSLPP TGCLPAARTL FGFHEKGCVS RLNTDAQNFN KKLNAAASKL QKQYSDLKIV VFDIYSPLYD LVQNPSKSGF TEATKGCCGT
301: GTVETTSLLC NPKSFGTCSN ATQYVFWDSV HPSEAANEIL ATALIGQGFS LLG
Arabidopsis Description
APGGDSL esterase/lipase APG [Source:UniProtKB/Swiss-Prot;Acc:Q9LU14]
SUBAcon: [endoplasmic reticulum,vacuole]
SUBAcon: [endoplasmic reticulum,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.