Factsheet for PGSC0003DMT400088508

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 4
cytosol 1
extracellular 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

extracellular: 24773703
extracellular: 25270759

msms PMID: 25270759 doi

DD Burra, O Berkowitz, PE Hedley, J Morris, S Resjö, F Levander, E Liljeroth, E Andreasson, E Alexandersson

msms PMID: 24773703 doi

T Bengtsson, D Weighill, E Proux-Wéra, F Levander, S Resjö, DD Burra, LI Moushib, PE Hedley, E Liljeroth, D Jacobson, E Alexandersson, E Andreasson

Department of Plant Protection Biology, Swedish University of Agricultural Sciences, Box 102, SE-230 53 Alnarp, Sweden. erik.alexandersson@slu.se.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400021670	Potato	extracellular	83.02	37.93
VIT_08s0007g04300.t01	Wine grape	extracellular, vacuole	76.73	33.61
PGSC0003DMT400027844	Potato	extracellular	31.45	33.56
GSMUA_Achr4P17640_001	Banana	extracellular, plasma membrane	70.44	31.28
PGSC0003DMT400001233	Potato	extracellular, plasma membrane	66.67	30.03
PGSC0003DMT400076811	Potato	cytosol	39.62	29.72
Bra040686.1-P	Field mustard	extracellular, plasma membrane	64.78	29.34
CDX76226	Canola	extracellular, plasma membrane	64.78	29.34
CDX95394	Canola	extracellular	64.15	29.06
AT3G53100.1	Thale cress	extracellular	61.64	27.92
TraesCS4A01G285700.1	Wheat	endoplasmic reticulum, plasma membrane	59.75	26.91
Zm00001d033522_P001	Maize	endoplasmic reticulum, extracellular, plasma membrane	60.38	26.74
Os03t0683800-01	Rice	plastid	59.75	26.61
TraesCS4D01G024900.1	Wheat	endoplasmic reticulum, plasma membrane	59.75	26.24
EER93662	Sorghum	endoplasmic reticulum, plasma membrane	59.75	26.24
TraesCS4B01G027100.1	Wheat	endoplasmic reticulum, plasma membrane	59.75	26.1
PGSC0003DMT400006459	Potato	extracellular	58.49	25.91
HORVU4Hr1G004100.1	Barley	endoplasmic reticulum, plasma membrane	59.75	25.89
GSMUA_Achr2P12520_001	Banana	plastid	64.15	25.76
PGSC0003DMT400006461	Potato	extracellular	53.46	23.68
PGSC0003DMT400020220	Potato	cytosol	30.82	15.12
PGSC0003DMT400033798	Potato	extracellular	10.69	7.26

Protein Annotations

EnsemblPlants:PGSC0003DMT400088508	EnsemblPlantsGene:PGSC0003DMG400038079	Gene3D:3.40.50.1110	GO:GO:0003674	GO:GO:0003824	GO:GO:0016787
GO:GO:0016788	InterPro:GDSL	InterPro:IPR036514	InterPro:SGNH_hydro_sf	PANTHER:PTHR22835	PANTHER:PTHR22835:SF288
PFAM:PF00657	PGSC:PGSC0003DMG400038079	SUPFAM:SSF52266	UniParc:UPI0002949ADC	UniProt:M1DG44	MapMan:35.1

Description

Zinc finger protein [Source:PGSC_GENE;Acc:PGSC0003DMG400038079]

Coordinates

chr9:-:4328377..4329124

Molecular Weight (calculated)

17271.8 Da

IEP (calculated)

8.834

GRAVY (calculated)

-0.002

Length

159 amino acids

Sequence
(BLAST)

001: MLISAAINVQ NLYDLGARRI GVTTLPPTGC LPAAITLFGR GTNECVAKLN KDAVSFNKKL NRTSQKLKSK LPGIKLVVFD IYQPLFDLIT KPAESGFFES
101: RKACCGTGTL ETSFLCNARS IGTCSNATNY VFWDGFHPSQ SANEKLAQSL LEQGFDLIS

Best Arabidopsis Sequence Match ( AT3G53100.1 )
(BLAST)

001: MQKMRVSGFR VLLLVSCFFC KSKGAVVPAL IMFGDSIVDV GNNNNLLSIV KSNFLPYGRD FIDQRPTGRF CNGKLAVDFS AEYLGFSSYP PAFLSREASN
101: ENILIGANFA SASSGYYDAT SVPFGSISLT RQLSYYRAYQ NRVTRMIGRG NARILFSRGI HILSAGSSDF LQNYYINPLL NILNTPDQFA DILLRSFSEF
201: IQNLYELGAR RIGVISLPPM GCLPAAITLF GAGNKSCVER LNNDAIMFNT KLENTTRLLM NRHSGLRLVA FNVYQPFLDI ITNPTDNGFF ETKRACCGTG
301: TIETSFLCNS LSFGTCVNAT GYVFWDGFHP TEAVNELLAG QLLGQGISLI N

Arabidopsis Description

GDSL esterase/lipase At3g53100 [Source:UniProtKB/Swiss-Prot;Acc:Q0WPI9]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.