Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 4
- golgi 4
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS3A01G099400.1 | |
| TraesCS3B01G115800.1 | |
| TraesCS3D01G099700.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G16370.1 | TraesCS3A01G099400.1 | AT2G01950.1 | 19000166 |
| AT3G16370.1 | TraesCS3B01G115800.1 | AT2G01950.1 | 19000166 |
| AT3G16370.1 | TraesCS3D01G099700.1 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G100600.1 | Wheat | endoplasmic reticulum, golgi | 95.58 | 94.54 |
| HORVU7Hr1G021620.2 | Barley | endoplasmic reticulum, golgi, mitochondrion | 94.48 | 92.93 |
| TraesCS3D01G431500.1 | Wheat | endoplasmic reticulum, golgi | 94.48 | 86.58 |
| Zm00001d036175_P001 | Maize | endoplasmic reticulum, extracellular, vacuole | 75.69 | 76.32 |
| EER87852 | Sorghum | extracellular | 75.41 | 75.62 |
| HORVU0Hr1G019420.1 | Barley | endoplasmic reticulum, mitochondrion | 46.41 | 72.41 |
| Os06t0149100-01 | Rice | cytosol | 29.28 | 64.63 |
| VIT_09s0002g03140.t01 | Wine grape | extracellular | 54.42 | 55.34 |
| TraesCS7A01G097100.1 | Wheat | golgi | 53.04 | 54.7 |
| TraesCS4A01G397000.1 | Wheat | extracellular | 53.04 | 54.7 |
| GSMUA_Achr7P08930_001 | Banana | endoplasmic reticulum, extracellular | 52.76 | 53.2 |
| GSMUA_Achr2P16800_001 | Banana | extracellular, vacuole | 52.49 | 53.07 |
| VIT_09s0002g03150.t01 | Wine grape | extracellular | 51.1 | 52.11 |
| KRH23361 | Soybean | nucleus | 50.55 | 51.84 |
| KRH47190 | Soybean | nucleus | 50.55 | 51.84 |
| Bra027168.1-P | Field mustard | extracellular | 50.0 | 51.13 |
| Solyc03g121180.2.1 | Tomato | nucleus | 50.55 | 50.97 |
| PGSC0003DMT400006459 | Potato | extracellular | 50.55 | 50.97 |
| CDY56196 | Canola | vacuole | 50.28 | 50.84 |
| AT3G16370.1 | Thale cress | endoplasmic reticulum, vacuole | 49.45 | 50.71 |
| KRH44252 | Soybean | nucleus | 50.83 | 50.41 |
| CDY30167 | Canola | extracellular | 49.17 | 50.28 |
| KRH09971 | Soybean | nucleus | 47.24 | 50.0 |
| PGSC0003DMT400006461 | Potato | extracellular | 48.9 | 49.3 |
| TraesCS4A01G398600.1 | Wheat | extracellular | 48.07 | 49.29 |
| TraesCS4A01G397900.1 | Wheat | extracellular | 47.51 | 48.59 |
| TraesCS4A01G285700.1 | Wheat | endoplasmic reticulum, plasma membrane | 47.24 | 48.44 |
| TraesCS7A01G099900.1 | Wheat | extracellular, golgi, plasma membrane | 47.51 | 47.91 |
| TraesCS4A01G398500.1 | Wheat | plasma membrane | 46.69 | 47.88 |
| TraesCS4A01G398700.1 | Wheat | extracellular | 47.24 | 47.77 |
| Solyc03g121170.2.1 | Tomato | nucleus | 50.0 | 43.41 |
| TraesCS7A01G100200.1 | Wheat | extracellular | 38.12 | 40.83 |
| CDX75880 | Canola | vacuole | 27.07 | 31.61 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G399300.1 | EnsemblPlantsGene:TraesCS4A01G399300 | Gene3D:3.40.50.1110 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0016787 |
| GO:GO:0016788 | InterPro:GDSL | InterPro:IPR036514 | InterPro:SGNH_hydro_sf | InterPro:SGNH_plant_lipase_like | PANTHER:PTHR22835 |
| PANTHER:PTHR22835:SF251 | PFAM:PF00657 | SEG:seg | SignalP:SignalP-noTM | SUPFAM:SSF52266 | TIGR:cd01837 |
| TMHMM:TMhelix | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chr4A:-:673965529..673966948
Molecular Weight (calculated)
39090.6 Da
IEP (calculated)
9.296
GRAVY (calculated)
-0.056
Length
362 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSSRSSSPA MQQMLALMAL FLLLSGGVHA QVVPAVISFG DSTIDVGNNN YLPGAVFKAN YAPYGENFRR HRATGRFSDG KIVTDITAET LGFEGYAPPY
101: LSPLASGKNL LTGANFGSAA SSYSDDTAAM YDAITLSQQL KYYKEYRSKL AAVAGRRQAR TILAEALYVV STGTGDFIQN YYHNASLSAR YDVDRYCDLL
201: VGIFSGFADE LYRLGARRIG VTTMPPLGCL PATIRLYGKG RSRTGCLPRL NRDAETFNRK LNATVGALVR RRAGLKVAVF DVYTPLRDLS ERPAAQGFAE
301: ARRTCCRTGN AGTRVYLCDP VTAAGMCRNA SSYVYFDGVH PSEAANLVIA ESLVSAGIDL LT
101: LSPLASGKNL LTGANFGSAA SSYSDDTAAM YDAITLSQQL KYYKEYRSKL AAVAGRRQAR TILAEALYVV STGTGDFIQN YYHNASLSAR YDVDRYCDLL
201: VGIFSGFADE LYRLGARRIG VTTMPPLGCL PATIRLYGKG RSRTGCLPRL NRDAETFNRK LNATVGALVR RRAGLKVAVF DVYTPLRDLS ERPAAQGFAE
301: ARRTCCRTGN AGTRVYLCDP VTAAGMCRNA SSYVYFDGVH PSEAANLVIA ESLVSAGIDL LT
001: MDRCTSSFLL LTLVSTLSIL QISFAQLVPA IMTFGDSVVD VGNNNYLPTL FRADYPPYGR DFANHKATGR FCNGKLATDI TAETLGFTKY PPAYLSPEAS
101: GKNLLIGANF ASAASGYDDK AALLNHAIPL YQQVEYFKEY KSKLIKIAGS KKADSIIKGA ICLLSAGSSD FVQNYYVNPL LYKVYTVDAY GSFLIDNFST
201: FIKQVYAVGA RKIGVTSLPP TGCLPAARTL FGFHEKGCVS RLNTDAQNFN KKLNAAASKL QKQYSDLKIV VFDIYSPLYD LVQNPSKSGF TEATKGCCGT
301: GTVETTSLLC NPKSFGTCSN ATQYVFWDSV HPSEAANEIL ATALIGQGFS LLG
101: GKNLLIGANF ASAASGYDDK AALLNHAIPL YQQVEYFKEY KSKLIKIAGS KKADSIIKGA ICLLSAGSSD FVQNYYVNPL LYKVYTVDAY GSFLIDNFST
201: FIKQVYAVGA RKIGVTSLPP TGCLPAARTL FGFHEKGCVS RLNTDAQNFN KKLNAAASKL QKQYSDLKIV VFDIYSPLYD LVQNPSKSGF TEATKGCCGT
301: GTVETTSLLC NPKSFGTCSN ATQYVFWDSV HPSEAANEIL ATALIGQGFS LLG
Arabidopsis Description
APGGDSL esterase/lipase APG [Source:UniProtKB/Swiss-Prot;Acc:Q9LU14]
SUBAcon: [endoplasmic reticulum,vacuole]
SUBAcon: [endoplasmic reticulum,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.