Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 7
- endoplasmic reticulum 5
- vacuole 6
- plasma membrane 5
- golgi 5
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc04g008430.1.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G16370.1 | Solyc04g008430.1.1 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400006459 | Potato | extracellular | 96.66 | 96.66 |
| KRH47190 | Soybean | nucleus | 77.16 | 78.47 |
| VIT_09s0002g03140.t01 | Wine grape | extracellular | 77.16 | 77.81 |
| KRH44252 | Soybean | nucleus | 77.99 | 76.71 |
| KRH23361 | Soybean | nucleus | 74.93 | 76.2 |
| KRH09971 | Soybean | nucleus | 70.19 | 73.68 |
| Bra027168.1-P | Field mustard | extracellular | 68.25 | 69.21 |
| AT3G16370.1 | Thale cress | endoplasmic reticulum, vacuole | 67.97 | 69.12 |
| Solyc03g121170.2.1 | Tomato | nucleus | 79.94 | 68.82 |
| CDY56196 | Canola | vacuole | 68.52 | 68.72 |
| CDY30167 | Canola | extracellular | 67.41 | 68.36 |
| GSMUA_Achr7P08930_001 | Banana | endoplasmic reticulum, extracellular | 67.69 | 67.69 |
| Os06t0148200-01 | Rice | extracellular | 65.18 | 66.67 |
| GSMUA_Achr2P16800_001 | Banana | extracellular, vacuole | 66.3 | 66.48 |
| EER87840 | Sorghum | extracellular, vacuole | 65.46 | 65.28 |
| Zm00001d011661_P001 | Maize | extracellular | 64.35 | 64.71 |
| TraesCS4A01G397000.1 | Wheat | extracellular | 62.4 | 63.82 |
| TraesCS7D01G093200.1 | Wheat | extracellular | 62.12 | 63.53 |
| TraesCS7A01G097100.1 | Wheat | golgi | 61.84 | 63.25 |
| VIT_09s0002g03150.t01 | Wine grape | extracellular | 62.12 | 62.82 |
| HORVU7Hr1G021630.2 | Barley | cytosol, plastid | 43.18 | 57.2 |
| HORVU7Hr1G021310.7 | Barley | extracellular | 62.67 | 57.11 |
| Solyc11g066700.1.1 | Tomato | extracellular, plasma membrane | 55.15 | 55.77 |
| Solyc10g085740.1.1 | Tomato | extracellular | 53.76 | 55.46 |
| TraesCS4A01G398500.1 | Wheat | plasma membrane | 53.48 | 54.39 |
| TraesCS7D01G094500.1 | Wheat | extracellular | 52.92 | 53.82 |
| TraesCS7D01G094000.1 | Wheat | extracellular | 52.09 | 53.28 |
| HORVU7Hr1G021580.1 | Barley | extracellular | 52.09 | 52.97 |
| TraesCS7A01G099900.1 | Wheat | extracellular, golgi, plasma membrane | 52.92 | 52.92 |
| TraesCS4A01G398700.1 | Wheat | extracellular | 52.65 | 52.79 |
| HORVU7Hr1G021460.4 | Barley | extracellular | 51.53 | 52.56 |
| TraesCS4A01G397900.1 | Wheat | extracellular | 51.81 | 52.54 |
| HORVU2Hr1G002340.1 | Barley | cytosol, plastid | 37.33 | 51.94 |
| TraesCS4A01G398600.1 | Wheat | extracellular | 50.7 | 51.56 |
| TraesCS4A01G399300.1 | Wheat | endoplasmic reticulum | 50.97 | 50.55 |
| EER87852 | Sorghum | extracellular | 50.42 | 50.14 |
| Zm00001d036175_P001 | Maize | endoplasmic reticulum, extracellular, vacuole | 49.86 | 49.86 |
| TraesCS7D01G094900.1 | Wheat | endoplasmic reticulum, golgi | 50.14 | 49.72 |
| TraesCS7A01G100600.1 | Wheat | endoplasmic reticulum, golgi | 50.42 | 49.45 |
| HORVU7Hr1G021620.2 | Barley | endoplasmic reticulum, golgi, mitochondrion | 50.42 | 49.18 |
| Solyc09g008690.1.1 | Tomato | extracellular | 31.2 | 47.86 |
| TraesCS3D01G431500.1 | Wheat | endoplasmic reticulum, golgi | 50.7 | 46.08 |
| TraesCS7A01G100200.1 | Wheat | extracellular | 42.9 | 45.56 |
| Os06t0149100-01 | Rice | cytosol | 18.94 | 41.46 |
| CDX75880 | Canola | vacuole | 35.65 | 41.29 |
| HORVU0Hr1G019420.1 | Barley | endoplasmic reticulum, mitochondrion | 25.91 | 40.09 |
| Solyc05g043310.1.1 | Tomato | extracellular | 13.65 | 36.84 |
Protein Annotations
| EnsemblPlants:Solyc03g121180.2.1 | EnsemblPlantsGene:Solyc03g121180.2 | Gene3D:3.40.50.1110 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0016787 |
| GO:GO:0016788 | InterPro:GDSL | InterPro:IPR036514 | InterPro:SGNH_hydro_sf | InterPro:SGNH_plant_lipase_like | PANTHER:PTHR22835 |
| PANTHER:PTHR22835:SF134 | PFAM:PF00657 | SignalP:SignalP-noTM | SUPFAM:SSF52266 | UniParc:UPI0002767137 | UniProt:K4BMR7 |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr3:-:69360298..69362469
Molecular Weight (calculated)
38958.4 Da
IEP (calculated)
8.591
GRAVY (calculated)
-0.057
Length
359 amino acids
Sequence
(BLAST)
(BLAST)
001: MGIYRQQKLA FFFVALLGFI HIRLNNAQSS TTLVPAIITF GDSAVDVGNN DYIHTLFKAN YPPYGRDFVT RQPTGRFCNG KLATDITADT LGFTTYPAAY
101: LSPEASGKNL LIGTNFASAA AGFDDKTAIL NHAIPFSTQM QYYKEYQSKL AKVAGSQKAA SILKDALYII SAGSSDFLQN YYINPYLNKL YTPDQYGSYL
201: VGIFTSSVKD LYGQGARRIG VTSLPPLGCL PAARTLFGFH ENGCVSKINT DAQQFNKKMN SAATQLQKQL PGLKIAVFDI FQPLYDLVKS PSDHGFAEAN
301: RGCCGTGTVE TTSLLCNPKS PGTCSNATQY VFWDSVHPSQ AANQVLADSL IIQGINLIG
101: LSPEASGKNL LIGTNFASAA AGFDDKTAIL NHAIPFSTQM QYYKEYQSKL AKVAGSQKAA SILKDALYII SAGSSDFLQN YYINPYLNKL YTPDQYGSYL
201: VGIFTSSVKD LYGQGARRIG VTSLPPLGCL PAARTLFGFH ENGCVSKINT DAQQFNKKMN SAATQLQKQL PGLKIAVFDI FQPLYDLVKS PSDHGFAEAN
301: RGCCGTGTVE TTSLLCNPKS PGTCSNATQY VFWDSVHPSQ AANQVLADSL IIQGINLIG
001: MDRCTSSFLL LTLVSTLSIL QISFAQLVPA IMTFGDSVVD VGNNNYLPTL FRADYPPYGR DFANHKATGR FCNGKLATDI TAETLGFTKY PPAYLSPEAS
101: GKNLLIGANF ASAASGYDDK AALLNHAIPL YQQVEYFKEY KSKLIKIAGS KKADSIIKGA ICLLSAGSSD FVQNYYVNPL LYKVYTVDAY GSFLIDNFST
201: FIKQVYAVGA RKIGVTSLPP TGCLPAARTL FGFHEKGCVS RLNTDAQNFN KKLNAAASKL QKQYSDLKIV VFDIYSPLYD LVQNPSKSGF TEATKGCCGT
301: GTVETTSLLC NPKSFGTCSN ATQYVFWDSV HPSEAANEIL ATALIGQGFS LLG
101: GKNLLIGANF ASAASGYDDK AALLNHAIPL YQQVEYFKEY KSKLIKIAGS KKADSIIKGA ICLLSAGSSD FVQNYYVNPL LYKVYTVDAY GSFLIDNFST
201: FIKQVYAVGA RKIGVTSLPP TGCLPAARTL FGFHEKGCVS RLNTDAQNFN KKLNAAASKL QKQYSDLKIV VFDIYSPLYD LVQNPSKSGF TEATKGCCGT
301: GTVETTSLLC NPKSFGTCSN ATQYVFWDSV HPSEAANEIL ATALIGQGFS LLG
Arabidopsis Description
APGGDSL esterase/lipase APG [Source:UniProtKB/Swiss-Prot;Acc:Q9LU14]
SUBAcon: [endoplasmic reticulum,vacuole]
SUBAcon: [endoplasmic reticulum,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.