Factsheet for VIT_09s0002g03140.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 5
vacuole 6
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0011g06410.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G16370.1	VIT_01s0011g06410.t01	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH47190	Soybean	nucleus	78.93	79.6
VIT_09s0002g03050.t01	Wine grape	extracellular	23.03	78.1
KRH44252	Soybean	nucleus	79.49	77.53
KRH23361	Soybean	nucleus	76.69	77.34
Solyc03g121180.2.1	Tomato	nucleus	77.81	77.16
PGSC0003DMT400006459	Potato	extracellular	77.81	77.16
KRH09971	Soybean	nucleus	71.91	74.85
GSMUA_Achr2P16800_001	Banana	extracellular, vacuole	71.63	71.23
AT3G16370.1	Thale cress	endoplasmic reticulum, vacuole	70.22	70.82
Os06t0148200-01	Rice	extracellular	69.66	70.66
PGSC0003DMT400006461	Potato	extracellular	71.07	70.47
GSMUA_Achr7P08930_001	Banana	endoplasmic reticulum, extracellular	70.79	70.19
Bra027168.1-P	Field mustard	extracellular	69.38	69.77
CDY30167	Canola	extracellular	69.38	69.77
CDY56196	Canola	vacuole	69.66	69.27
VIT_09s0002g03150.t01	Wine grape	extracellular	67.13	67.32
Zm00001d011661_P001	Maize	extracellular	67.13	66.95
EER87840	Sorghum	extracellular, vacuole	67.42	66.67
TraesCS4A01G397000.1	Wheat	extracellular	64.61	65.53
TraesCS7D01G093200.1	Wheat	extracellular	64.61	65.53
TraesCS7A01G097100.1	Wheat	golgi	63.76	64.67
Solyc03g121170.2.1	Tomato	nucleus	69.66	59.47
HORVU7Hr1G021310.7	Barley	extracellular	64.33	58.12
HORVU7Hr1G021630.2	Barley	cytosol, plastid	43.26	56.83
HORVU7Hr1G021580.1	Barley	extracellular	56.18	56.66
TraesCS4A01G398600.1	Wheat	extracellular	56.18	56.66
VIT_08s0007g04300.t01	Wine grape	extracellular, vacuole	57.02	55.92
TraesCS4A01G397900.1	Wheat	extracellular	55.06	55.37
TraesCS7D01G094000.1	Wheat	extracellular	54.49	55.27
TraesCS7D01G094500.1	Wheat	extracellular	54.78	55.24
TraesCS4A01G398500.1	Wheat	plasma membrane	54.21	54.67
TraesCS4A01G399300.1	Wheat	endoplasmic reticulum	55.34	54.42
TraesCS7A01G099900.1	Wheat	extracellular, golgi, plasma membrane	54.78	54.32
Zm00001d036175_P001	Maize	endoplasmic reticulum, extracellular, vacuole	54.49	54.04
HORVU7Hr1G021460.4	Barley	extracellular	53.37	53.98
TraesCS4A01G398700.1	Wheat	extracellular	54.21	53.91
TraesCS7D01G094900.1	Wheat	endoplasmic reticulum, golgi	54.78	53.87
HORVU7Hr1G021620.2	Barley	endoplasmic reticulum, golgi, mitochondrion	55.62	53.8
EER87852	Sorghum	extracellular	54.49	53.74
HORVU2Hr1G002340.1	Barley	cytosol, plastid	38.76	53.49
TraesCS7A01G100600.1	Wheat	endoplasmic reticulum, golgi	54.78	53.28
TraesCS3D01G431500.1	Wheat	endoplasmic reticulum, golgi	55.62	50.13
TraesCS7A01G100200.1	Wheat	extracellular	43.82	46.15
Os06t0149100-01	Rice	cytosol	20.79	45.12
HORVU0Hr1G019420.1	Barley	endoplasmic reticulum, mitochondrion	29.21	44.83
CDX75880	Canola	vacuole	36.24	41.61

Protein Annotations

EntrezGene:104877427	Gene3D:3.40.50.1110	MapMan:35.1	UniProt:A5BE55	EMBL:AM456273	ProteinID:CAN65529
ProteinID:CAN65529.1	ProteinID:CBI36030	ProteinID:CBI36030.3	EMBL:FN596494	InterPro:GDSL	GO:GO:0003674
GO:GO:0003824	GO:GO:0016787	GO:GO:0016788	InterPro:IPR036514	PFAM:PF00657	PANTHER:PTHR22835
PANTHER:PTHR22835:SF134	InterPro:SGNH_hydro_sf	InterPro:SGNH_plant_lipase_like	SUPFAM:SSF52266	SignalP:SignalP-noTM	TIGR:TC55188
UniParc:UPI0001520A35	ArrayExpress:VIT_09s0002g03140	EnsemblPlantsGene:VIT_09s0002g03140	EnsemblPlants:VIT_09s0002g03140.t01	unigene:Vvi.21958	unigene:Vvi.5282
RefSeq:XP_010654595.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr9:+:2894701..2896464

Molecular Weight (calculated)

38088.6 Da

IEP (calculated)

8.117

GRAVY (calculated)

0.133

Length

356 amino acids

Sequence
(BLAST)

001: MGIHCCWALF LALALALTFA TIGEAQDATL VPAIITFGDS AVDVGNNDYL LTIFKANYPP YGRDFINHQP TGRFCNGKLA TDITADTLGF KTYPPAYLSP
101: KASGKNLLIG ANFASAGSGY DDKTAILSHA IPLSQQLEYY KEYQAKLAKV AGSQKAATII KDALYVVGAG SSDFIQNYYV NPFLNKVYTP DQYASILVGI
201: FSSFIKDLYG LGARRIGLTS LPPLGCLPAT KTLFGFHQSG CVSRLNTDAQ GFNKKINSAV SSLQKQLSGL KIAVFDIYKP LYDIIKSPSD YGFAEASRGC
301: CGTGTIETTS LLCNPKSIGT CPNATQYVFW DSVHPSQAAN QVLADALILQ GIGLIG

Best Arabidopsis Sequence Match ( AT3G16370.1 )
(BLAST)

001: MDRCTSSFLL LTLVSTLSIL QISFAQLVPA IMTFGDSVVD VGNNNYLPTL FRADYPPYGR DFANHKATGR FCNGKLATDI TAETLGFTKY PPAYLSPEAS
101: GKNLLIGANF ASAASGYDDK AALLNHAIPL YQQVEYFKEY KSKLIKIAGS KKADSIIKGA ICLLSAGSSD FVQNYYVNPL LYKVYTVDAY GSFLIDNFST
201: FIKQVYAVGA RKIGVTSLPP TGCLPAARTL FGFHEKGCVS RLNTDAQNFN KKLNAAASKL QKQYSDLKIV VFDIYSPLYD LVQNPSKSGF TEATKGCCGT
301: GTVETTSLLC NPKSFGTCSN ATQYVFWDSV HPSEAANEIL ATALIGQGFS LLG

Arabidopsis Description

APGGDSL esterase/lipase APG [Source:UniProtKB/Swiss-Prot;Acc:Q9LU14]
SUBAcon: [endoplasmic reticulum,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.