Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 4
- vacuole 5
- plasma membrane 4
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS3A01G099400.1 | |
| TraesCS3B01G115800.1 | |
| TraesCS3D01G099700.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G16370.1 | TraesCS3A01G099400.1 | AT2G01950.1 | 19000166 |
| AT3G16370.1 | TraesCS3B01G115800.1 | AT2G01950.1 | 19000166 |
| AT3G16370.1 | TraesCS3D01G099700.1 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU7Hr1G021630.2 | Barley | cytosol, plastid | 65.92 | 87.08 |
| TraesCS7A01G100200.1 | Wheat | extracellular | 73.18 | 77.51 |
| TraesCS4A01G398500.1 | Wheat | plasma membrane | 65.08 | 66.01 |
| Os06t0148200-01 | Rice | extracellular | 64.25 | 65.53 |
| TraesCS7A01G099900.1 | Wheat | extracellular, golgi, plasma membrane | 65.64 | 65.46 |
| TraesCS4A01G397900.1 | Wheat | extracellular | 63.41 | 64.12 |
| TraesCS4A01G397000.1 | Wheat | extracellular | 62.57 | 63.82 |
| TraesCS7A01G097100.1 | Wheat | golgi | 62.29 | 63.53 |
| EER87840 | Sorghum | extracellular, vacuole | 63.69 | 63.33 |
| TraesCS4A01G398600.1 | Wheat | extracellular | 61.45 | 62.32 |
| Zm00001d011661_P001 | Maize | extracellular | 61.73 | 61.9 |
| GSMUA_Achr7P08930_001 | Banana | endoplasmic reticulum, extracellular | 59.22 | 59.05 |
| GSMUA_Achr2P16800_001 | Banana | extracellular, vacuole | 58.38 | 58.38 |
| VIT_09s0002g03140.t01 | Wine grape | extracellular | 53.91 | 54.21 |
| KRH47190 | Soybean | nucleus | 53.35 | 54.11 |
| KRH23361 | Soybean | nucleus | 52.51 | 53.26 |
| Solyc03g121180.2.1 | Tomato | nucleus | 52.79 | 52.65 |
| KRH44252 | Soybean | nucleus | 53.63 | 52.6 |
| AT3G16370.1 | Thale cress | endoplasmic reticulum, vacuole | 51.4 | 52.12 |
| PGSC0003DMT400006459 | Potato | extracellular | 52.23 | 52.09 |
| Bra027168.1-P | Field mustard | extracellular | 51.12 | 51.69 |
| CDY30167 | Canola | extracellular | 51.12 | 51.69 |
| CDY56196 | Canola | vacuole | 51.4 | 51.4 |
| PGSC0003DMT400006461 | Potato | extracellular | 51.4 | 51.25 |
| KRH09971 | Soybean | nucleus | 48.88 | 51.17 |
| TraesCS4A01G285700.1 | Wheat | endoplasmic reticulum, plasma membrane | 50.28 | 50.99 |
| TraesCS4A01G399300.1 | Wheat | endoplasmic reticulum | 47.77 | 47.24 |
| TraesCS7A01G100600.1 | Wheat | endoplasmic reticulum, golgi | 46.93 | 45.9 |
| VIT_09s0002g03150.t01 | Wine grape | extracellular | 45.25 | 45.63 |
| Solyc03g121170.2.1 | Tomato | nucleus | 51.4 | 44.12 |
| CDX75880 | Canola | vacuole | 26.82 | 30.97 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G398700.1 | EnsemblPlantsGene:TraesCS4A01G398700 | Gene3D:3.40.50.1110 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0016787 |
| GO:GO:0016788 | InterPro:GDSL | InterPro:IPR036514 | InterPro:SGNH_hydro_sf | InterPro:SGNH_plant_lipase_like | PANTHER:PTHR22835 |
| PANTHER:PTHR22835:SF134 | PFAM:PF00657 | SEG:seg | SignalP:SignalP-noTM | SUPFAM:SSF52266 | TIGR:cd01837 |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr4A:+:673716503..673718494
Molecular Weight (calculated)
38938.6 Da
IEP (calculated)
5.838
GRAVY (calculated)
0.120
Length
358 amino acids
Sequence
(BLAST)
(BLAST)
001: MVRQVPMAMR CLLLLAVSLV AGPWKQPGDA RPLVPAVMLF GDSLLDIGNN DYILTIAKAN FPPYGRDFED HIATGRFSNG KVLSDFIGES LGFTSSPVAY
101: LSPEASGENL VSGANFASAQ SGYYDQTAHM YNVIPLSQQL EHFKEYRHKL VVLVGSSQAE SIISDSLYII SAGSNDYLFN YYINPFIHKS PDQFSDLLIG
201: IFNSTVAELY GMGARRIGVF SLPSFGCAPL TITVFGHGGN DTCVTSLNND ARKFNRKLSA SIDLLSKRYH DLKIAALDLY TPVYSLVTSP GSQGFTETRR
301: GCCGTGTVEA TVFLCNPISI GTCRNATMYV FWDSVHPTEA ANKVIADSLV EGIDLLVM
101: LSPEASGENL VSGANFASAQ SGYYDQTAHM YNVIPLSQQL EHFKEYRHKL VVLVGSSQAE SIISDSLYII SAGSNDYLFN YYINPFIHKS PDQFSDLLIG
201: IFNSTVAELY GMGARRIGVF SLPSFGCAPL TITVFGHGGN DTCVTSLNND ARKFNRKLSA SIDLLSKRYH DLKIAALDLY TPVYSLVTSP GSQGFTETRR
301: GCCGTGTVEA TVFLCNPISI GTCRNATMYV FWDSVHPTEA ANKVIADSLV EGIDLLVM
001: MDRCTSSFLL LTLVSTLSIL QISFAQLVPA IMTFGDSVVD VGNNNYLPTL FRADYPPYGR DFANHKATGR FCNGKLATDI TAETLGFTKY PPAYLSPEAS
101: GKNLLIGANF ASAASGYDDK AALLNHAIPL YQQVEYFKEY KSKLIKIAGS KKADSIIKGA ICLLSAGSSD FVQNYYVNPL LYKVYTVDAY GSFLIDNFST
201: FIKQVYAVGA RKIGVTSLPP TGCLPAARTL FGFHEKGCVS RLNTDAQNFN KKLNAAASKL QKQYSDLKIV VFDIYSPLYD LVQNPSKSGF TEATKGCCGT
301: GTVETTSLLC NPKSFGTCSN ATQYVFWDSV HPSEAANEIL ATALIGQGFS LLG
101: GKNLLIGANF ASAASGYDDK AALLNHAIPL YQQVEYFKEY KSKLIKIAGS KKADSIIKGA ICLLSAGSSD FVQNYYVNPL LYKVYTVDAY GSFLIDNFST
201: FIKQVYAVGA RKIGVTSLPP TGCLPAARTL FGFHEKGCVS RLNTDAQNFN KKLNAAASKL QKQYSDLKIV VFDIYSPLYD LVQNPSKSGF TEATKGCCGT
301: GTVETTSLLC NPKSFGTCSN ATQYVFWDSV HPSEAANEIL ATALIGQGFS LLG
Arabidopsis Description
APGGDSL esterase/lipase APG [Source:UniProtKB/Swiss-Prot;Acc:Q9LU14]
SUBAcon: [endoplasmic reticulum,vacuole]
SUBAcon: [endoplasmic reticulum,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.