Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- mitochondrion 1
- extracellular 4
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 5
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS3A01G099400.1 | |
| TraesCS3B01G115800.1 | |
| TraesCS3D01G099700.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G16370.1 | TraesCS3A01G099400.1 | AT2G01950.1 | 19000166 |
| AT3G16370.1 | TraesCS3B01G115800.1 | AT2G01950.1 | 19000166 |
| AT3G16370.1 | TraesCS3D01G099700.1 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G094500.1 | Wheat | extracellular | 96.03 | 96.03 |
| TraesCS7A01G099900.1 | Wheat | extracellular, golgi, plasma membrane | 91.5 | 89.97 |
| HORVU2Hr1G002340.1 | Barley | cytosol, plastid | 59.21 | 81.01 |
| Os06t0148200-01 | Rice | extracellular | 67.99 | 68.38 |
| TraesCS4A01G397900.1 | Wheat | extracellular | 67.99 | 67.8 |
| TraesCS4A01G398600.1 | Wheat | extracellular | 66.86 | 66.86 |
| TraesCS4A01G397000.1 | Wheat | extracellular | 65.44 | 65.81 |
| TraesCS7A01G097100.1 | Wheat | golgi | 65.16 | 65.53 |
| TraesCS4A01G398700.1 | Wheat | extracellular | 66.01 | 65.08 |
| EER87840 | Sorghum | extracellular, vacuole | 65.16 | 63.89 |
| Zm00001d011661_P001 | Maize | extracellular | 64.31 | 63.59 |
| TraesCS7A01G100200.1 | Wheat | extracellular | 56.94 | 59.47 |
| GSMUA_Achr2P16800_001 | Banana | extracellular, vacuole | 59.49 | 58.66 |
| GSMUA_Achr7P08930_001 | Banana | endoplasmic reticulum, extracellular | 59.21 | 58.22 |
| VIT_09s0002g03140.t01 | Wine grape | extracellular | 54.67 | 54.21 |
| KRH47190 | Soybean | nucleus | 53.82 | 53.82 |
| PGSC0003DMT400006459 | Potato | extracellular | 54.39 | 53.48 |
| Solyc03g121180.2.1 | Tomato | nucleus | 54.39 | 53.48 |
| KRH23361 | Soybean | nucleus | 52.97 | 52.97 |
| Bra027168.1-P | Field mustard | extracellular | 51.56 | 51.41 |
| AT3G16370.1 | Thale cress | endoplasmic reticulum, vacuole | 51.27 | 51.27 |
| CDY30167 | Canola | extracellular | 51.27 | 51.13 |
| CDY56196 | Canola | vacuole | 51.84 | 51.12 |
| KRH44252 | Soybean | nucleus | 52.69 | 50.96 |
| KRH09971 | Soybean | nucleus | 47.88 | 49.42 |
| PGSC0003DMT400006461 | Potato | extracellular | 48.73 | 47.91 |
| TraesCS4A01G285700.1 | Wheat | endoplasmic reticulum, plasma membrane | 47.03 | 47.03 |
| TraesCS4A01G399300.1 | Wheat | endoplasmic reticulum | 47.88 | 46.69 |
| TraesCS7A01G100600.1 | Wheat | endoplasmic reticulum, golgi | 47.59 | 45.9 |
| VIT_09s0002g03150.t01 | Wine grape | extracellular | 45.89 | 45.63 |
| Solyc03g121170.2.1 | Tomato | nucleus | 49.29 | 41.73 |
| CDX75880 | Canola | vacuole | 27.2 | 30.97 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G398500.1 | EnsemblPlantsGene:TraesCS4A01G398500 | Gene3D:3.40.50.1110 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0016787 |
| GO:GO:0016788 | InterPro:GDSL | InterPro:IPR036514 | InterPro:SGNH_hydro_sf | InterPro:SGNH_plant_lipase_like | PANTHER:PTHR22835 |
| PANTHER:PTHR22835:SF134 | PFAM:PF00657 | SignalP:SignalP-noTM | SUPFAM:SSF52266 | TIGR:cd01837 | MapMan:35.1 |
Description
No Description!
Coordinates
chr4A:+:673488922..673490431
Molecular Weight (calculated)
38193.6 Da
IEP (calculated)
8.122
GRAVY (calculated)
0.085
Length
353 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVRFLVFSA IFLFMGPTTD GREAQPAVPG VMLFGDSLVG VGNNDYIATL VKANKAPYGR DFKDQVATGR FGNGKLLSDI IGEKLGFNGS PPAYLSPQAS
101: GQNLLIGANF ASAGSGYYDP TSRIYHVIPF SRQLEYFKEY QSKLSVVAGS NHARSIISDS LYIISAGSND FGFNYYINPL FFLTENADQF SDRLVGIFNN
201: TVTQLYAMGA RRVGVFSLVP LGCAPLAITV FGLGRSRCVP RLNDDAQRFN GKLGAAVDSL SKRYNDLKIA VLDIYTPWHS LATSPGAHGF AEARHGCCAT
301: GLVEFTVFLC NSLSIGTCPN ATTHVHWDSI HPSEAANRVI VDSLAERINK LVM
101: GQNLLIGANF ASAGSGYYDP TSRIYHVIPF SRQLEYFKEY QSKLSVVAGS NHARSIISDS LYIISAGSND FGFNYYINPL FFLTENADQF SDRLVGIFNN
201: TVTQLYAMGA RRVGVFSLVP LGCAPLAITV FGLGRSRCVP RLNDDAQRFN GKLGAAVDSL SKRYNDLKIA VLDIYTPWHS LATSPGAHGF AEARHGCCAT
301: GLVEFTVFLC NSLSIGTCPN ATTHVHWDSI HPSEAANRVI VDSLAERINK LVM
001: MDRCTSSFLL LTLVSTLSIL QISFAQLVPA IMTFGDSVVD VGNNNYLPTL FRADYPPYGR DFANHKATGR FCNGKLATDI TAETLGFTKY PPAYLSPEAS
101: GKNLLIGANF ASAASGYDDK AALLNHAIPL YQQVEYFKEY KSKLIKIAGS KKADSIIKGA ICLLSAGSSD FVQNYYVNPL LYKVYTVDAY GSFLIDNFST
201: FIKQVYAVGA RKIGVTSLPP TGCLPAARTL FGFHEKGCVS RLNTDAQNFN KKLNAAASKL QKQYSDLKIV VFDIYSPLYD LVQNPSKSGF TEATKGCCGT
301: GTVETTSLLC NPKSFGTCSN ATQYVFWDSV HPSEAANEIL ATALIGQGFS LLG
101: GKNLLIGANF ASAASGYDDK AALLNHAIPL YQQVEYFKEY KSKLIKIAGS KKADSIIKGA ICLLSAGSSD FVQNYYVNPL LYKVYTVDAY GSFLIDNFST
201: FIKQVYAVGA RKIGVTSLPP TGCLPAARTL FGFHEKGCVS RLNTDAQNFN KKLNAAASKL QKQYSDLKIV VFDIYSPLYD LVQNPSKSGF TEATKGCCGT
301: GTVETTSLLC NPKSFGTCSN ATQYVFWDSV HPSEAANEIL ATALIGQGFS LLG
Arabidopsis Description
APGGDSL esterase/lipase APG [Source:UniProtKB/Swiss-Prot;Acc:Q9LU14]
SUBAcon: [endoplasmic reticulum,vacuole]
SUBAcon: [endoplasmic reticulum,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.