Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 4
- vacuole 5
- plasma membrane 4
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d000055_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G16370.1 | Zm00001d000055_P001 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER87840 | Sorghum | extracellular, vacuole | 89.92 | 89.17 |
| Os06t0148200-01 | Rice | extracellular | 80.39 | 81.77 |
| TraesCS7D01G093200.1 | Wheat | extracellular | 78.15 | 79.49 |
| TraesCS4A01G397000.1 | Wheat | extracellular | 78.15 | 79.49 |
| TraesCS7A01G097100.1 | Wheat | golgi | 77.03 | 78.35 |
| GSMUA_Achr7P08930_001 | Banana | endoplasmic reticulum, extracellular | 71.99 | 71.59 |
| GSMUA_Achr2P16800_001 | Banana | extracellular, vacuole | 70.87 | 70.67 |
| HORVU7Hr1G021310.7 | Barley | extracellular | 77.31 | 70.05 |
| VIT_09s0002g03140.t01 | Wine grape | extracellular | 66.95 | 67.13 |
| HORVU7Hr1G021630.2 | Barley | cytosol, plastid | 49.86 | 65.68 |
| KRH47190 | Soybean | nucleus | 64.15 | 64.87 |
| TraesCS7D01G094500.1 | Wheat | extracellular | 63.87 | 64.59 |
| TraesCS4A01G398600.1 | Wheat | extracellular | 63.87 | 64.59 |
| Solyc03g121180.2.1 | Tomato | nucleus | 64.71 | 64.35 |
| PGSC0003DMT400006459 | Potato | extracellular | 64.71 | 64.35 |
| TraesCS4A01G398500.1 | Wheat | plasma membrane | 63.59 | 64.31 |
| TraesCS7A01G099900.1 | Wheat | extracellular, golgi, plasma membrane | 64.43 | 64.07 |
| KRH23361 | Soybean | nucleus | 63.03 | 63.74 |
| HORVU7Hr1G021460.4 | Barley | extracellular | 62.75 | 63.64 |
| AT3G16370.1 | Thale cress | endoplasmic reticulum, vacuole | 62.75 | 63.46 |
| KRH44252 | Soybean | nucleus | 64.15 | 62.74 |
| TraesCS7D01G094000.1 | Wheat | extracellular | 61.62 | 62.68 |
| TraesCS4A01G397900.1 | Wheat | extracellular | 61.9 | 62.43 |
| HORVU7Hr1G021580.1 | Barley | extracellular | 61.34 | 62.04 |
| TraesCS4A01G398700.1 | Wheat | extracellular | 61.9 | 61.73 |
| Bra027168.1-P | Field mustard | extracellular | 61.06 | 61.58 |
| CDY30167 | Canola | extracellular | 60.78 | 61.3 |
| CDY56196 | Canola | vacuole | 61.34 | 61.17 |
| KRH09971 | Soybean | nucleus | 58.54 | 61.11 |
| HORVU2Hr1G002340.1 | Barley | cytosol, plastid | 43.7 | 60.47 |
| PGSC0003DMT400006461 | Potato | extracellular | 60.22 | 59.89 |
| Zm00001d036175_P001 | Maize | endoplasmic reticulum, extracellular, vacuole | 59.38 | 59.05 |
| VIT_09s0002g03150.t01 | Wine grape | extracellular | 55.74 | 56.06 |
| Zm00001d033522_P001 | Maize | endoplasmic reticulum, extracellular, plasma membrane | 55.18 | 54.87 |
| TraesCS7A01G100200.1 | Wheat | extracellular | 50.7 | 53.55 |
| Solyc03g121170.2.1 | Tomato | nucleus | 60.5 | 51.8 |
| CDX75880 | Canola | vacuole | 33.05 | 38.06 |
| Zm00001d024117_P001 | Maize | cytosol, mitochondrion | 12.61 | 32.85 |
| Zm00001d044521_P001 | Maize | cytosol, mitochondrion | 12.61 | 32.85 |
Protein Annotations
| EnsemblPlants:Zm00001d011661_P001 | EnsemblPlants:Zm00001d011661_T001 | EnsemblPlantsGene:Zm00001d011661 | Gene3D:3.40.50.1110 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0016787 | GO:GO:0016788 | InterPro:GDSL | InterPro:IPR036514 | InterPro:SGNH_hydro_sf | InterPro:SGNH_plant_lipase_like |
| PANTHER:PTHR22835 | PANTHER:PTHR22835:SF134 | PFAM:PF00657 | ProteinID:AQK97696.1 | SEG:seg | SignalP:SignalP-noTM |
| SUPFAM:SSF52266 | UniParc:UPI000189D48C | UniProt:A0A1D6G2V6 | MapMan:35.1 | : | : |
Description
GDSL esterase/lipase APG
Coordinates
chr8:+:157816116..157817894
Molecular Weight (calculated)
38063.4 Da
IEP (calculated)
6.230
GRAVY (calculated)
0.152
Length
357 amino acids
Sequence
(BLAST)
(BLAST)
001: MMALQAQGTR VPLVLALFLL LAGCGSEAQP LVPALFTFGD SSVDVGNNDY LHTIIKANFP PYGRDFANHV ATGRFCNGKL ATDITADTLG FTTYPAAYLS
101: PQASGQNLLI GANFASAGSG YYDHTALMYH AIPLSQQLEY FREYQTKLAA VAGAGQARSI LSGALYIVSA GASDFVQNYY INPLLFKTQT ADQFSDRLVA
201: IFGRTVQELY GMGARRVGVT SLPPLGCLPA SITLFGHGAA GCVSRLNSDA QSFNRKMNGT VDALARRYPD LKIAVFDIYT PLYDLATDPQ SQGFAEARRG
301: CCGTGTVETT VLLCNPKSVG TCPNATSYVF WDAVHPSEAA NQVIADSLIT EGLILVT
101: PQASGQNLLI GANFASAGSG YYDHTALMYH AIPLSQQLEY FREYQTKLAA VAGAGQARSI LSGALYIVSA GASDFVQNYY INPLLFKTQT ADQFSDRLVA
201: IFGRTVQELY GMGARRVGVT SLPPLGCLPA SITLFGHGAA GCVSRLNSDA QSFNRKMNGT VDALARRYPD LKIAVFDIYT PLYDLATDPQ SQGFAEARRG
301: CCGTGTVETT VLLCNPKSVG TCPNATSYVF WDAVHPSEAA NQVIADSLIT EGLILVT
001: MDRCTSSFLL LTLVSTLSIL QISFAQLVPA IMTFGDSVVD VGNNNYLPTL FRADYPPYGR DFANHKATGR FCNGKLATDI TAETLGFTKY PPAYLSPEAS
101: GKNLLIGANF ASAASGYDDK AALLNHAIPL YQQVEYFKEY KSKLIKIAGS KKADSIIKGA ICLLSAGSSD FVQNYYVNPL LYKVYTVDAY GSFLIDNFST
201: FIKQVYAVGA RKIGVTSLPP TGCLPAARTL FGFHEKGCVS RLNTDAQNFN KKLNAAASKL QKQYSDLKIV VFDIYSPLYD LVQNPSKSGF TEATKGCCGT
301: GTVETTSLLC NPKSFGTCSN ATQYVFWDSV HPSEAANEIL ATALIGQGFS LLG
101: GKNLLIGANF ASAASGYDDK AALLNHAIPL YQQVEYFKEY KSKLIKIAGS KKADSIIKGA ICLLSAGSSD FVQNYYVNPL LYKVYTVDAY GSFLIDNFST
201: FIKQVYAVGA RKIGVTSLPP TGCLPAARTL FGFHEKGCVS RLNTDAQNFN KKLNAAASKL QKQYSDLKIV VFDIYSPLYD LVQNPSKSGF TEATKGCCGT
301: GTVETTSLLC NPKSFGTCSN ATQYVFWDSV HPSEAANEIL ATALIGQGFS LLG
Arabidopsis Description
APGGDSL esterase/lipase APG [Source:UniProtKB/Swiss-Prot;Acc:Q9LU14]
SUBAcon: [endoplasmic reticulum,vacuole]
SUBAcon: [endoplasmic reticulum,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.