Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU3Hr1G018030.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G16370.1 | HORVU3Hr1G018030.1 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G398700.1 | Wheat | extracellular | 87.08 | 65.92 |
| TraesCS7A01G100200.1 | Wheat | extracellular | 69.0 | 55.33 |
| Os06t0148200-01 | Rice | extracellular | 70.85 | 54.7 |
| HORVU2Hr1G002340.1 | Barley | cytosol, plastid | 52.03 | 54.65 |
| EER87840 | Sorghum | extracellular, vacuole | 68.63 | 51.67 |
| HORVU7Hr1G021460.4 | Barley | extracellular | 66.42 | 51.14 |
| Zm00001d011661_P001 | Maize | extracellular | 65.68 | 49.86 |
| GSMUA_Achr7P08930_001 | Banana | endoplasmic reticulum, extracellular | 63.84 | 48.19 |
| GSMUA_Achr2P16800_001 | Banana | extracellular, vacuole | 63.1 | 47.77 |
| HORVU7Hr1G021580.1 | Barley | extracellular | 61.99 | 47.59 |
| HORVU7Hr1G021310.7 | Barley | extracellular | 66.05 | 45.43 |
| KRH47190 | Soybean | nucleus | 57.2 | 43.91 |
| VIT_09s0002g03140.t01 | Wine grape | extracellular | 56.83 | 43.26 |
| Solyc03g121180.2.1 | Tomato | nucleus | 57.2 | 43.18 |
| KRH44252 | Soybean | nucleus | 57.56 | 42.74 |
| Bra027168.1-P | Field mustard | extracellular | 55.72 | 42.66 |
| PGSC0003DMT400006459 | Potato | extracellular | 56.46 | 42.62 |
| CDY30167 | Canola | extracellular | 55.35 | 42.37 |
| AT3G16370.1 | Thale cress | endoplasmic reticulum, vacuole | 54.98 | 42.21 |
| CDY56196 | Canola | vacuole | 55.72 | 42.18 |
| KRH23361 | Soybean | nucleus | 54.24 | 41.64 |
| KRH09971 | Soybean | nucleus | 49.82 | 39.47 |
| PGSC0003DMT400006461 | Potato | extracellular | 52.03 | 39.28 |
| HORVU4Hr1G004100.1 | Barley | endoplasmic reticulum, plasma membrane | 52.77 | 38.96 |
| VIT_09s0002g03150.t01 | Wine grape | extracellular | 49.08 | 37.46 |
| HORVU7Hr1G021620.2 | Barley | endoplasmic reticulum, golgi, mitochondrion | 49.45 | 36.41 |
| Solyc03g121170.2.1 | Tomato | nucleus | 51.66 | 33.57 |
| HORVU0Hr1G019420.1 | Barley | endoplasmic reticulum, mitochondrion | 19.93 | 23.28 |
| HORVU3Hr1G089960.1 | Barley | plastid | 16.61 | 21.95 |
| CDX75880 | Canola | vacuole | 25.09 | 21.94 |
| HORVU1Hr1G065930.2 | Barley | mitochondrion | 13.28 | 9.05 |
Protein Annotations
| EnsemblPlants:HORVU7Hr1G021630.2 | EnsemblPlantsGene:HORVU7Hr1G021630 | Gene3D:3.40.50.1110 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0016787 |
| GO:GO:0016788 | InterPro:GDSL | InterPro:IPR036514 | InterPro:SGNH_hydro_sf | InterPro:SGNH_plant_lipase_like | PANTHER:PTHR22835 |
| PANTHER:PTHR22835:SF134 | PFAM:PF00657 | SUPFAM:SSF52266 | UniParc:UPI000B482785 | UniProt:A0A287VN76 | MapMan:35.1 |
Description
No Description!
Coordinates
chrchr7H:-:31146227..31147557
Molecular Weight (calculated)
29662.1 Da
IEP (calculated)
4.977
GRAVY (calculated)
0.067
Length
271 amino acids
Sequence
(BLAST)
(BLAST)
001: GEILGFTSSP YAYLSPDASG ENLLSGANFA SAASGYYDQT AHMYNVIPLS QQLEYFKEYQ HKLEVLAGSS QAQSIISDSL YIISAGSNDY LFNYYIKPFI
101: YKSPDQFSDL LIGIFNNTVA ELYGMGARRI GVFSLPSFGC APLTITVFGH GGNDTCVTRL NNDAQRFNRK LSTSVDVMSN WYHDLKIVVL DLYTPLHSLV
201: TSPRSQGFTE ARRGCCGTGT VEATVFLCNP ISIGTCPNAT VYVFWDSIHP TEAANKLIAD SLIDGINLLV M
101: YKSPDQFSDL LIGIFNNTVA ELYGMGARRI GVFSLPSFGC APLTITVFGH GGNDTCVTRL NNDAQRFNRK LSTSVDVMSN WYHDLKIVVL DLYTPLHSLV
201: TSPRSQGFTE ARRGCCGTGT VEATVFLCNP ISIGTCPNAT VYVFWDSIHP TEAANKLIAD SLIDGINLLV M
001: MDRCTSSFLL LTLVSTLSIL QISFAQLVPA IMTFGDSVVD VGNNNYLPTL FRADYPPYGR DFANHKATGR FCNGKLATDI TAETLGFTKY PPAYLSPEAS
101: GKNLLIGANF ASAASGYDDK AALLNHAIPL YQQVEYFKEY KSKLIKIAGS KKADSIIKGA ICLLSAGSSD FVQNYYVNPL LYKVYTVDAY GSFLIDNFST
201: FIKQVYAVGA RKIGVTSLPP TGCLPAARTL FGFHEKGCVS RLNTDAQNFN KKLNAAASKL QKQYSDLKIV VFDIYSPLYD LVQNPSKSGF TEATKGCCGT
301: GTVETTSLLC NPKSFGTCSN ATQYVFWDSV HPSEAANEIL ATALIGQGFS LLG
101: GKNLLIGANF ASAASGYDDK AALLNHAIPL YQQVEYFKEY KSKLIKIAGS KKADSIIKGA ICLLSAGSSD FVQNYYVNPL LYKVYTVDAY GSFLIDNFST
201: FIKQVYAVGA RKIGVTSLPP TGCLPAARTL FGFHEKGCVS RLNTDAQNFN KKLNAAASKL QKQYSDLKIV VFDIYSPLYD LVQNPSKSGF TEATKGCCGT
301: GTVETTSLLC NPKSFGTCSN ATQYVFWDSV HPSEAANEIL ATALIGQGFS LLG
Arabidopsis Description
APGGDSL esterase/lipase APG [Source:UniProtKB/Swiss-Prot;Acc:Q9LU14]
SUBAcon: [endoplasmic reticulum,vacuole]
SUBAcon: [endoplasmic reticulum,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.