Subcellular Localization
min:
: max
Winner_takes_all: golgi
Predictor Summary:
Predictor Summary:
- extracellular 7
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 4
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
golgi:
25769308
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS3A01G099400.1 | |
| TraesCS3B01G115800.1 | |
| TraesCS3D01G099700.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G16370.1 | TraesCS3A01G099400.1 | AT2G01950.1 | 19000166 |
| AT3G16370.1 | TraesCS3B01G115800.1 | AT2G01950.1 | 19000166 |
| AT3G16370.1 | TraesCS3D01G099700.1 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G093200.1 | Wheat | extracellular | 98.29 | 98.29 |
| TraesCS4A01G397000.1 | Wheat | extracellular | 98.01 | 98.01 |
| HORVU7Hr1G021310.7 | Barley | extracellular | 97.44 | 86.8 |
| Os06t0148200-01 | Rice | extracellular | 81.48 | 81.48 |
| EER87840 | Sorghum | extracellular, vacuole | 79.2 | 77.22 |
| Zm00001d011661_P001 | Maize | extracellular | 78.35 | 77.03 |
| GSMUA_Achr2P16800_001 | Banana | extracellular, vacuole | 69.23 | 67.88 |
| GSMUA_Achr7P08930_001 | Banana | endoplasmic reticulum, extracellular | 69.23 | 67.69 |
| TraesCS4A01G398500.1 | Wheat | plasma membrane | 65.53 | 65.16 |
| VIT_09s0002g03140.t01 | Wine grape | extracellular | 64.67 | 63.76 |
| TraesCS4A01G398600.1 | Wheat | extracellular | 64.1 | 63.74 |
| TraesCS7A01G099900.1 | Wheat | extracellular, golgi, plasma membrane | 64.96 | 63.51 |
| KRH47190 | Soybean | nucleus | 63.82 | 63.46 |
| TraesCS4A01G397900.1 | Wheat | extracellular | 63.82 | 63.28 |
| AT3G16370.1 | Thale cress | endoplasmic reticulum, vacuole | 63.25 | 62.89 |
| TraesCS4A01G398700.1 | Wheat | extracellular | 63.53 | 62.29 |
| KRH23361 | Soybean | nucleus | 62.39 | 62.04 |
| PGSC0003DMT400006459 | Potato | extracellular | 63.25 | 61.84 |
| Solyc03g121180.2.1 | Tomato | nucleus | 63.25 | 61.84 |
| KRH44252 | Soybean | nucleus | 64.1 | 61.64 |
| Bra027168.1-P | Field mustard | extracellular | 61.82 | 61.3 |
| CDY30167 | Canola | extracellular | 61.82 | 61.3 |
| CDY56196 | Canola | vacuole | 62.11 | 60.89 |
| KRH09971 | Soybean | nucleus | 58.97 | 60.53 |
| PGSC0003DMT400006461 | Potato | extracellular | 58.4 | 57.1 |
| TraesCS4A01G285700.1 | Wheat | endoplasmic reticulum, plasma membrane | 56.41 | 56.09 |
| TraesCS7A01G100200.1 | Wheat | extracellular | 52.42 | 54.44 |
| VIT_09s0002g03150.t01 | Wine grape | extracellular | 53.85 | 53.24 |
| TraesCS4A01G399300.1 | Wheat | endoplasmic reticulum | 54.7 | 53.04 |
| TraesCS7A01G100600.1 | Wheat | endoplasmic reticulum, golgi | 54.13 | 51.91 |
| Solyc03g121170.2.1 | Tomato | nucleus | 58.12 | 48.92 |
| CDX75880 | Canola | vacuole | 33.33 | 37.74 |
Protein Annotations
| EnsemblPlants:TraesCS7A01G097100.1 | EnsemblPlantsGene:TraesCS7A01G097100 | Gene3D:3.40.50.1110 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0016787 |
| GO:GO:0016788 | InterPro:GDSL | InterPro:IPR036514 | InterPro:SGNH_hydro_sf | InterPro:SGNH_plant_lipase_like | PANTHER:PTHR22835 |
| PANTHER:PTHR22835:SF134 | PFAM:PF00657 | SEG:seg | SignalP:SignalP-noTM | SUPFAM:SSF52266 | TIGR:cd01837 |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr7A:+:59417191..59418834
Molecular Weight (calculated)
37635.8 Da
IEP (calculated)
7.120
GRAVY (calculated)
0.143
Length
351 amino acids
Sequence
(BLAST)
(BLAST)
001: MGVRCLLLLA VLLLAGDHGG EAQPLVPGVF TFGDSSVDIG NNDYLHTLIK ADFPPYGRDF PNRVATGRFC NGKLATDITA DTLGFTSYPP AYLSPQASGK
101: NLLIGANFAS AGSGYYDHTA LMYHAIPFSQ QLEYFREYQS KLTAFAGSSQ AKSIISGSLY IVSFGASDFV QNYYINPLLF KTQTVDQFSD RLVSIFVNSA
201: TQLYGMGARR IAVTTLPPLG CLPAAITLFG HGSTGCVSRL NSDSQRFNGK MSAAVSSLSK RYHDLKIAVF DIYTPLFSLV TSPGDQGFTE AKRGCCGTGK
301: VEFTVFLCNP KSVGTCSNAS TYVFWDAVHP SEAANQVIAD ALLVTGIDLV T
101: NLLIGANFAS AGSGYYDHTA LMYHAIPFSQ QLEYFREYQS KLTAFAGSSQ AKSIISGSLY IVSFGASDFV QNYYINPLLF KTQTVDQFSD RLVSIFVNSA
201: TQLYGMGARR IAVTTLPPLG CLPAAITLFG HGSTGCVSRL NSDSQRFNGK MSAAVSSLSK RYHDLKIAVF DIYTPLFSLV TSPGDQGFTE AKRGCCGTGK
301: VEFTVFLCNP KSVGTCSNAS TYVFWDAVHP SEAANQVIAD ALLVTGIDLV T
001: MDRCTSSFLL LTLVSTLSIL QISFAQLVPA IMTFGDSVVD VGNNNYLPTL FRADYPPYGR DFANHKATGR FCNGKLATDI TAETLGFTKY PPAYLSPEAS
101: GKNLLIGANF ASAASGYDDK AALLNHAIPL YQQVEYFKEY KSKLIKIAGS KKADSIIKGA ICLLSAGSSD FVQNYYVNPL LYKVYTVDAY GSFLIDNFST
201: FIKQVYAVGA RKIGVTSLPP TGCLPAARTL FGFHEKGCVS RLNTDAQNFN KKLNAAASKL QKQYSDLKIV VFDIYSPLYD LVQNPSKSGF TEATKGCCGT
301: GTVETTSLLC NPKSFGTCSN ATQYVFWDSV HPSEAANEIL ATALIGQGFS LLG
101: GKNLLIGANF ASAASGYDDK AALLNHAIPL YQQVEYFKEY KSKLIKIAGS KKADSIIKGA ICLLSAGSSD FVQNYYVNPL LYKVYTVDAY GSFLIDNFST
201: FIKQVYAVGA RKIGVTSLPP TGCLPAARTL FGFHEKGCVS RLNTDAQNFN KKLNAAASKL QKQYSDLKIV VFDIYSPLYD LVQNPSKSGF TEATKGCCGT
301: GTVETTSLLC NPKSFGTCSN ATQYVFWDSV HPSEAANEIL ATALIGQGFS LLG
Arabidopsis Description
APGGDSL esterase/lipase APG [Source:UniProtKB/Swiss-Prot;Acc:Q9LU14]
SUBAcon: [endoplasmic reticulum,vacuole]
SUBAcon: [endoplasmic reticulum,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.