Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, golgi
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- endoplasmic reticulum 4
- extracellular 3
- vacuole 3
- plasma membrane 3
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS3A01G099400.1 | |
| TraesCS3B01G115800.1 | |
| TraesCS3D01G099700.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G16370.1 | TraesCS3A01G099400.1 | AT2G01950.1 | 19000166 |
| AT3G16370.1 | TraesCS3B01G115800.1 | AT2G01950.1 | 19000166 |
| AT3G16370.1 | TraesCS3D01G099700.1 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G100600.1 | Wheat | endoplasmic reticulum, golgi | 96.96 | 95.9 |
| HORVU7Hr1G021620.2 | Barley | endoplasmic reticulum, golgi, mitochondrion | 95.03 | 93.48 |
| TraesCS3D01G431500.1 | Wheat | endoplasmic reticulum, golgi | 96.41 | 88.35 |
| Zm00001d036175_P001 | Maize | endoplasmic reticulum, extracellular, vacuole | 75.41 | 76.04 |
| EER87852 | Sorghum | extracellular | 74.86 | 75.07 |
| HORVU0Hr1G019420.1 | Barley | endoplasmic reticulum, mitochondrion | 47.24 | 73.71 |
| Os06t0149100-01 | Rice | cytosol | 29.56 | 65.24 |
| VIT_09s0002g03140.t01 | Wine grape | extracellular | 53.87 | 54.78 |
| TraesCS7D01G093200.1 | Wheat | extracellular | 52.49 | 54.13 |
| GSMUA_Achr7P08930_001 | Banana | endoplasmic reticulum, extracellular | 52.21 | 52.65 |
| GSMUA_Achr2P16800_001 | Banana | extracellular, vacuole | 51.93 | 52.51 |
| VIT_09s0002g03150.t01 | Wine grape | extracellular | 51.1 | 52.11 |
| KRH47190 | Soybean | nucleus | 50.28 | 51.56 |
| KRH23361 | Soybean | nucleus | 50.0 | 51.27 |
| Bra027168.1-P | Field mustard | extracellular | 49.45 | 50.56 |
| CDY56196 | Canola | vacuole | 49.72 | 50.28 |
| AT3G16370.1 | Thale cress | endoplasmic reticulum, vacuole | 48.9 | 50.14 |
| PGSC0003DMT400006459 | Potato | extracellular | 49.72 | 50.14 |
| Solyc03g121180.2.1 | Tomato | nucleus | 49.72 | 50.14 |
| KRH44252 | Soybean | nucleus | 50.55 | 50.14 |
| CDY30167 | Canola | extracellular | 48.62 | 49.72 |
| PGSC0003DMT400006461 | Potato | extracellular | 49.17 | 49.58 |
| KRH09971 | Soybean | nucleus | 46.69 | 49.42 |
| TraesCS7D01G094500.1 | Wheat | extracellular | 47.79 | 49.01 |
| TraesCS7D01G094000.1 | Wheat | extracellular | 46.41 | 47.86 |
| TraesCS4D01G024900.1 | Wheat | endoplasmic reticulum, plasma membrane | 47.51 | 47.51 |
| Solyc03g121170.2.1 | Tomato | nucleus | 50.0 | 43.41 |
| TraesCS7D01G346800.1 | Wheat | cytosol, extracellular, mitochondrion | 12.15 | 31.43 |
| CDX75880 | Canola | vacuole | 26.52 | 30.97 |
Protein Annotations
| EnsemblPlants:TraesCS7D01G094900.1 | EnsemblPlantsGene:TraesCS7D01G094900 | Gene3D:3.40.50.1110 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0016787 |
| GO:GO:0016788 | InterPro:GDSL | InterPro:IPR036514 | InterPro:SGNH_hydro_sf | InterPro:SGNH_plant_lipase_like | PANTHER:PTHR22835 |
| PANTHER:PTHR22835:SF251 | PFAM:PF00657 | PFscan:PS51257 | SEG:seg | SignalP:SignalP-noTM | SUPFAM:SSF52266 |
| TIGR:cd01837 | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chr7D:+:56998606..56999993
Molecular Weight (calculated)
39144.7 Da
IEP (calculated)
9.511
GRAVY (calculated)
-0.068
Length
362 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSSRSSSPA MQRRLVLVAL PLLLSCVVDG QVVPAVISFG DSTIDVGNNN YLPGAVFKAN YAPYGENFRR HRATGRFSDG KIVTDITAET LGFEGYAPPY
101: LSPLASGKNL LTGANFGSAA SSYSDDTAAM YDAITLSQQL KYYKEYRSKL AAVAGRRQAR TILAEALYVV STGTGDFIQN YYHNASLSAR YDVDRYCDLL
201: VGIFSGFADE LYRLGARRIG VTTMPPLGCL PATIRLYGKG RSRTGCLPRL NRDAETFNRK LNATVGALVR RHAGLKVAVF DVYTPLRGLS ERPAAHGFAE
301: ARRTCCRTGK AGTRVYLCDP ATAARMCRNA SSYVYFDGVH PSEAANLVVA ESLVSAGIDL LT
101: LSPLASGKNL LTGANFGSAA SSYSDDTAAM YDAITLSQQL KYYKEYRSKL AAVAGRRQAR TILAEALYVV STGTGDFIQN YYHNASLSAR YDVDRYCDLL
201: VGIFSGFADE LYRLGARRIG VTTMPPLGCL PATIRLYGKG RSRTGCLPRL NRDAETFNRK LNATVGALVR RHAGLKVAVF DVYTPLRGLS ERPAAHGFAE
301: ARRTCCRTGK AGTRVYLCDP ATAARMCRNA SSYVYFDGVH PSEAANLVVA ESLVSAGIDL LT
001: MDRCTSSFLL LTLVSTLSIL QISFAQLVPA IMTFGDSVVD VGNNNYLPTL FRADYPPYGR DFANHKATGR FCNGKLATDI TAETLGFTKY PPAYLSPEAS
101: GKNLLIGANF ASAASGYDDK AALLNHAIPL YQQVEYFKEY KSKLIKIAGS KKADSIIKGA ICLLSAGSSD FVQNYYVNPL LYKVYTVDAY GSFLIDNFST
201: FIKQVYAVGA RKIGVTSLPP TGCLPAARTL FGFHEKGCVS RLNTDAQNFN KKLNAAASKL QKQYSDLKIV VFDIYSPLYD LVQNPSKSGF TEATKGCCGT
301: GTVETTSLLC NPKSFGTCSN ATQYVFWDSV HPSEAANEIL ATALIGQGFS LLG
101: GKNLLIGANF ASAASGYDDK AALLNHAIPL YQQVEYFKEY KSKLIKIAGS KKADSIIKGA ICLLSAGSSD FVQNYYVNPL LYKVYTVDAY GSFLIDNFST
201: FIKQVYAVGA RKIGVTSLPP TGCLPAARTL FGFHEKGCVS RLNTDAQNFN KKLNAAASKL QKQYSDLKIV VFDIYSPLYD LVQNPSKSGF TEATKGCCGT
301: GTVETTSLLC NPKSFGTCSN ATQYVFWDSV HPSEAANEIL ATALIGQGFS LLG
Arabidopsis Description
APGGDSL esterase/lipase APG [Source:UniProtKB/Swiss-Prot;Acc:Q9LU14]
SUBAcon: [endoplasmic reticulum,vacuole]
SUBAcon: [endoplasmic reticulum,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.