Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY28645 | Canola | nucleus | 60.54 | 59.39 |
| CDY06563 | Canola | nucleus | 52.44 | 59.39 |
| Bra002880.1-P | Field mustard | endoplasmic reticulum | 61.44 | 55.26 |
| CDY20754 | Canola | nucleus | 54.5 | 53.4 |
| Bra035582.1-P | Field mustard | nucleus | 53.73 | 52.64 |
| AT4G26630.1 | Thale cress | nucleus | 50.0 | 50.98 |
| CDY17352 | Canola | extracellular, vacuole | 54.24 | 50.97 |
| VIT_19s0015g00430.t01 | Wine grape | nucleus | 37.4 | 48.58 |
| Solyc07g065490.2.1 | Tomato | nucleus | 32.52 | 39.91 |
| KRG98507 | Soybean | nucleus | 37.66 | 39.86 |
| PGSC0003DMT400057390 | Potato | extracellular, nucleus | 33.8 | 38.51 |
| PGSC0003DMT400037344 | Potato | endoplasmic reticulum, vacuole | 17.1 | 38.22 |
| KRH46360 | Soybean | nucleus | 35.6 | 37.43 |
| KRH46364 | Soybean | nucleus | 38.3 | 36.93 |
| KRG98502 | Soybean | nucleus | 34.06 | 36.3 |
| Solyc10g006000.2.1 | Tomato | nucleus | 25.45 | 35.74 |
| AT3G48710.1 | Thale cress | nucleus | 19.67 | 33.12 |
| EER91265 | Sorghum | nucleus | 24.81 | 29.92 |
| Zm00001d033159_P001 | Maize | nucleus | 17.1 | 29.75 |
| AT5G63550.2 | Thale cress | nucleus | 19.92 | 29.19 |
| Zm00001d013757_P010 | Maize | nucleus | 23.78 | 28.33 |
| Os03t0596900-01 | Rice | nucleus | 23.14 | 25.6 |
| GSMUA_Achr9P09250_001 | Banana | endoplasmic reticulum, golgi | 10.54 | 25.55 |
| TraesCS4B01G148100.1 | Wheat | nucleus | 24.16 | 19.34 |
| TraesCS4D01G153300.1 | Wheat | nucleus | 24.55 | 19.06 |
| HORVU4Hr1G035250.1 | Barley | nucleus | 23.91 | 18.77 |
| TraesCS4A01G137900.1 | Wheat | nucleus | 23.39 | 18.61 |
| OQU91413 | Sorghum | nucleus | 19.92 | 11.47 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:35.2 | EntrezGene:835660 | ProteinID:AED96664.1 | ArrayExpress:AT5G55660 | EnsemblPlantsGene:AT5G55660 |
| RefSeq:AT5G55660 | TAIR:AT5G55660 | RefSeq:AT5G55660-TAIR-G | EnsemblPlants:AT5G55660.1 | TAIR:AT5G55660.1 | Unigene:At.43929 |
| ncoils:Coil | InterPro:DEK_C | UniProt:F4K4Y5 | GO:GO:0003674 | GO:GO:0003682 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 |
| GO:GO:0005739 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006338 | GO:GO:0006950 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0042393 | GO:GO:2000779 | RefSeq:NP_200377.1 |
| PFAM:PF08766 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR13468 | PANTHER:PTHR13468:SF8 | SUPFAM:SSF109715 | UniParc:UPI0000162886 |
| SEG:seg | : | : | : | : | : |
Description
DEK domain-containing chromatin associated protein [Source:UniProtKB/TrEMBL;Acc:F4K4Y5]
Coordinates
chr5:+:22538556..22543474
Molecular Weight (calculated)
87210.7 Da
IEP (calculated)
4.445
GRAVY (calculated)
-1.588
Length
778 amino acids
Sequence
(BLAST)
(BLAST)
001: MGEEDTKVIV EPTANGTSSL QKTSDAISGK EVQENASGKE VQESKKEEDT GLEKMEIDDE GKQHEGESET GDKEVEVTEE EKKDVGEDKE QPEADKMDED
101: TDDKNLKADD GVSGVATEED AVMKESVESA DNKDAENPEG EQEKESKEEK LEGGKANGNE EGDTEEKLVG GDKGDDVDEA EKVENVDEDD KEEALKEKNE
201: AELAEEEETN KGEEVKEANK EDDVEADTKV AEPEVEDKKT ESKDENEDKE EEKEDEKEES MDDKEDEKEE SNDDDKEDEK EESNDDKEDK KEDIKKSNKR
301: GKGKTEKTRG KTKSDEEKKD IEPKTPFFSD RPVRERKSVE RLVAVVDKDS SREFHVEKGK GTPLKDIPNV AYKVSRKKSD EVFKQLHTIL FGGKRVKATQ
401: LKAHILRFSG YKWQGDEEKA KLKVKEKFEK INKEKLLEFC DLFDISVAKA TTKKEDIVTK LVEFLEKPHA TTDVLVNEKE KGVKRKRTPK KSSPAAGSSS
501: SKRSAKSQKK TEEATRTNKK SVAHSDDESE EEKEDDEEEE KEQEVEEEEE ENENGIPDKS EDEAPQLSES EENVESEEES EEETKKKKRG SRTSSDKKES
601: AGKSRSKKTA VPTKSSPPKK ATQKRSAGKR KKSDDDSDTS PKASSKRKKT EKPAKEQAAA PLKSVSKEKP VIGKRGGKGK DKNKEPSDEE LKTAIIDILK
701: GVDFNTATFT DILKRLDAKF NISLASKKSS IKRMIQDELT KLADEAEDEE GEEEDAEHEE EEEKEKAKGS GGGEEVKA
101: TDDKNLKADD GVSGVATEED AVMKESVESA DNKDAENPEG EQEKESKEEK LEGGKANGNE EGDTEEKLVG GDKGDDVDEA EKVENVDEDD KEEALKEKNE
201: AELAEEEETN KGEEVKEANK EDDVEADTKV AEPEVEDKKT ESKDENEDKE EEKEDEKEES MDDKEDEKEE SNDDDKEDEK EESNDDKEDK KEDIKKSNKR
301: GKGKTEKTRG KTKSDEEKKD IEPKTPFFSD RPVRERKSVE RLVAVVDKDS SREFHVEKGK GTPLKDIPNV AYKVSRKKSD EVFKQLHTIL FGGKRVKATQ
401: LKAHILRFSG YKWQGDEEKA KLKVKEKFEK INKEKLLEFC DLFDISVAKA TTKKEDIVTK LVEFLEKPHA TTDVLVNEKE KGVKRKRTPK KSSPAAGSSS
501: SKRSAKSQKK TEEATRTNKK SVAHSDDESE EEKEDDEEEE KEQEVEEEEE ENENGIPDKS EDEAPQLSES EENVESEEES EEETKKKKRG SRTSSDKKES
601: AGKSRSKKTA VPTKSSPPKK ATQKRSAGKR KKSDDDSDTS PKASSKRKKT EKPAKEQAAA PLKSVSKEKP VIGKRGGKGK DKNKEPSDEE LKTAIIDILK
701: GVDFNTATFT DILKRLDAKF NISLASKKSS IKRMIQDELT KLADEAEDEE GEEEDAEHEE EEEKEKAKGS GGGEEVKA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.